{"id":"W2021433042","doi":"10.1111/j.1462-2920.2008.01862.x","title":"Survey of <i>Pseudomonas aeruginosa</i> and its phages: <i>de novo</i> peptide sequencing as a novel tool to assess the diversity of worldwide collected viruses","year":2009,"lang":"en","type":"article","venue":"Environmental Microbiology","topic":"Bacteriophages and microbial interactions","field":"Environmental Science","cited_by":43,"is_retracted":false,"has_abstract":true,"ca_institutions":"Université Laval","funders":"","keywords":"Biology; Pseudomonas aeruginosa; Podoviridae; Microbiology; Phage therapy; Genome; Population; Bacteriophage; Genetics; Virology; Bacteria; Gene; Escherichia coli","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000218167,0.0002814128,0.0002751238,0.0008246086,0.0002398999,0.0005558899,0.0001781029,0.0002722691,0.0002541605],"category_scores_gemma":[0.0005591734,0.0001278334,0.0001949538,0.0005615274,0.0001849118,0.0002515259,0.0003004061,0.0002617615,0.0001385522],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001619239,"about_ca_system_score_gemma":0.0001476398,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001006852,"about_ca_topic_score_gemma":0.001237198,"domain_scores_codex":[0.9997759,0.00004005227,0.00001470153,0.00007070808,0.000059195,0.00003945487],"domain_scores_gemma":[0.9996891,0.00006717235,0.00008915497,0.00002609168,0.00007408948,0.00005441708],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.0001166787,0.00004997914,0.05216106,0.00006269835,0.00003083281,0.0001697953,0.0002228243,0.0002788367,0.9364551,0.00005724374,0.0000435541,0.01035136],"study_design_scores_gemma":[0.00002164291,0.0009962441,0.7248478,0.00004119531,0.0001255833,0.004678509,0.0009247,0.003358836,0.2593588,0.0002122419,0.00539968,0.00003482656],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9978389,0.0002435096,0.001284787,0.00001756935,0.000001705652,0.00001369763,0.0002866578,0.000007390657,0.0003058379],"genre_scores_gemma":[0.9925287,0.0004721381,0.004901821,0.00003791694,0.000008991045,0.00001901267,0.001644891,0.0000106247,0.000375966],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.001006852,"threshold_uncertainty_score":0.002001941,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.02823326648824021,"score_gpt":0.2466955945052648,"score_spread":0.2184623280170246,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}