{"id":"W2021433042","doi":"10.1111/j.1462-2920.2008.01862.x","title":"Survey of <i>Pseudomonas aeruginosa</i> and its phages: <i>de novo</i> peptide sequencing as a novel tool to assess the diversity of worldwide collected viruses","year":2009,"lang":"en","type":"article","venue":"Environmental Microbiology","topic":"Bacteriophages and microbial interactions","field":"Environmental Science","cited_by":43,"is_retracted":false,"has_abstract":true,"ca_institutions":"Université Laval","funders":"","keywords":"Biology; Pseudomonas aeruginosa; Podoviridae; Microbiology; Phage therapy; Genome; Population; Bacteriophage; Genetics; Virology; Bacteria; Gene; Escherichia coli","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0003115413,0.0002062678,0.0002961007,0.00004364039,0.0002421312,0.00001260847,0.0003503842,0.00009504154,0.0007814499],"category_scores_gemma":[0.00006108866,0.000175123,0.00007144881,0.0002094304,0.0003028139,0.0001399998,0.0006563163,0.0001744475,0.00009327364],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0002813904,"about_ca_system_score_gemma":0.00001915986,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001710264,"about_ca_topic_score_gemma":0.0007498222,"domain_scores_codex":[0.9987444,0.0001554191,0.0003365467,0.000360776,0.00007160081,0.000331263],"domain_scores_gemma":[0.9992972,0.0001965167,0.0001878137,0.000232372,0.000006438695,0.00007967972],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.0001028828,0.0001734531,0.0189594,0.000003751382,0.00002704475,0.000004622695,0.0006265406,0.0001455114,0.9791591,0.000005454763,0.0004558364,0.0003364103],"study_design_scores_gemma":[0.0003987034,0.0002187636,0.5165624,0.00001620642,0.00002853071,0.0001488949,0.0001307676,0.00001113484,0.4806672,0.000005571978,0.001642121,0.0001696869],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9982109,0.00007960714,0.0001268321,0.0001355288,0.00008038791,0.0003679874,0.0005432894,0.00001304676,0.0004424198],"genre_scores_gemma":[0.9970996,0.00006049419,0.0005246274,0.001758637,0.00001095318,0.000005263573,0.00003620288,0.00001120183,0.0004930435],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.4984919,"threshold_uncertainty_score":0.8556328,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.02823326648824021,"score_gpt":0.2466955945052648,"score_spread":0.2184623280170246,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}