{"id":"W2021519267","doi":"10.1371/journal.ppat.1002602","title":"Peptidoglycan-Modifying Enzyme Pgp1 Is Required for Helical Cell Shape and Pathogenicity Traits in Campylobacter jejuni","year":2012,"lang":"en","type":"article","venue":"PLoS Pathogens","topic":"Salmonella and Campylobacter epidemiology","field":"Agricultural and Biological Sciences","cited_by":106,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Toronto; University of British Columbia","funders":"National Institute of Allergy and Infectious Diseases; Canadian Institutes of Health Research; Newcastle University; Wellcome Trust; Wellcome; Burroughs Wellcome Fund","keywords":"Peptidoglycan; Campylobacter jejuni; Biology; Microbiology; Bacterial cell structure; Virulence; Cell envelope; Mutant; Cell wall; Biochemistry; Bacteria; Gene; Escherichia coli; Genetics","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0004985429,0.000303108,0.0004847755,0.00002963315,0.0001748477,0.00003612521,0.0002371645,0.0003255342,0.0003222093],"category_scores_gemma":[0.0001686706,0.0001428657,0.0001829071,0.0002400834,0.00008518555,0.0001992687,0.0001161404,0.0001937176,0.00004561331],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00004926768,"about_ca_system_score_gemma":0.0000105528,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00005217522,"about_ca_topic_score_gemma":0.0001421413,"domain_scores_codex":[0.9976177,0.0002195871,0.0004615976,0.0005606401,0.0001717198,0.0009687729],"domain_scores_gemma":[0.9987489,0.0006078731,0.0001381739,0.00009782793,0.00006153289,0.0003456872],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.00007432914,0.0003426477,0.1359052,0.00002905283,0.00001338467,0.000006076743,0.0006493543,3.180244e-7,0.849914,0.00006970816,0.0003525174,0.01264344],"study_design_scores_gemma":[0.0009335235,0.0005925068,0.9492214,0.00005559017,0.00009704469,0.00005865207,0.0007198879,0.0007965556,0.03251356,0.0007176394,0.01341222,0.0008813741],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9967885,0.0008534144,0.000009402267,0.0008752086,0.0001275856,0.0005005489,0.000425411,0.00006724268,0.0003526935],"genre_scores_gemma":[0.9970366,0.0001449088,0.0004810589,0.001315544,0.0006759993,0.0001070854,0.00008835799,0.000005173078,0.0001452689],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.8174004,"threshold_uncertainty_score":0.5825893,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.06039752724568887,"score_gpt":0.2540404296368205,"score_spread":0.1936429023911316,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}