{"id":"W2021540314","doi":"10.4161/gmic.2.3.16483","title":"Mucosal changes in a long-term bovine intestinal segment model following removal of ingesta and microflora","year":2011,"lang":"en","type":"article","venue":"Gut Microbes","topic":"Milk Quality and Mastitis in Dairy Cows","field":"Agricultural and Biological Sciences","cited_by":40,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Saskatchewan","funders":"Canadian Institutes of Health Research","keywords":"Biology; Microbiology; Ileum; Immune system; Escherichia coli; Crypt; Peyer's patch; Epithelium; Intestinal mucosa; Jejunum; Immunology; Internal medicine; Endocrinology; Biochemistry","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002550623,0.0001291184,0.0001997126,0.00002540087,0.00005500035,0.00001661469,0.0001849462,0.00006969641,0.0001056545],"category_scores_gemma":[0.00003926433,0.00006150351,0.00005019646,0.0001301709,0.00007955899,0.00008074987,0.0001893024,0.00009634325,0.000003413476],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00001548765,"about_ca_system_score_gemma":0.000008458866,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0005423401,"about_ca_topic_score_gemma":0.00616446,"domain_scores_codex":[0.9991809,0.00004956411,0.0002134995,0.0002440069,0.00008505232,0.0002270104],"domain_scores_gemma":[0.9997435,0.00004982337,0.00007179954,0.00005641566,0.00002468762,0.00005376248],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.00007462178,0.0001274706,0.03708247,0.00005188766,0.000009796808,0.00008043135,0.001016648,7.882587e-7,0.9259473,0.0001663701,0.0001083434,0.03533385],"study_design_scores_gemma":[0.00131696,0.001360946,0.7663876,0.001231601,0.00008175763,0.0004635621,0.001275237,0.0004191,0.2229519,0.002251974,0.001258942,0.001000415],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9979784,0.001030347,0.00005050261,0.0002392196,0.0000718246,0.0001350156,0.00002746968,0.00002477141,0.0004424638],"genre_scores_gemma":[0.9965196,0.0001895921,0.002837645,0.0001361234,0.00004736997,0.000006696581,0.00002537625,0.000001244596,0.0002363204],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.7293051,"threshold_uncertainty_score":0.3439913,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.04543168076477137,"score_gpt":0.242144615914415,"score_spread":0.1967129351496436,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}