{"id":"W2021800442","doi":"10.1142/9781860947575_0024","title":"WHOLE GENOME COMPOSITION DISTANCE FOR HIV-1 GENOTYPING","year":2006,"lang":"en","type":"article","venue":"Computational Systems Bioinformatics","topic":"Genomics and Phylogenetic Studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":3,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Alberta","funders":"","keywords":"Genotyping; Genome; Computational biology; Closeness; Human immunodeficiency virus (HIV); Biology; Genetics; Gene; Genotype; Mathematics; Virology","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001120343,0.000127792,0.0001358611,0.000033583,0.000194703,0.0000613283,0.0001095683,0.0000635044,6.688314e-7],"category_scores_gemma":[0.000006256816,0.0001282778,0.00006951376,0.00004908568,0.00004184805,0.000002281049,0.0000450822,0.00002603058,0.00001947351],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0000265962,"about_ca_system_score_gemma":0.00003739624,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.000006601412,"about_ca_topic_score_gemma":0.000002796921,"domain_scores_codex":[0.9991947,0.00001252963,0.0003687238,0.000133759,0.0001110142,0.0001792442],"domain_scores_gemma":[0.9994827,0.00002409396,0.0001570563,0.0001256098,0.0001771214,0.00003340952],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"simulation_or_modeling","study_design_gemma":"not_applicable","study_design_scores_codex":[0.00005580199,0.00006633491,0.001356833,0.0003382916,0.0001165031,4.857387e-7,0.0001626569,0.8794706,0.09887825,0.01116822,0.007993059,0.0003929457],"study_design_scores_gemma":[0.002119673,0.0002839748,0.02676032,0.0000645648,0.00005805368,0.00005471357,0.0003815575,0.4814663,0.001279169,0.002843979,0.4838433,0.0008443717],"study_design_candidate":"simulation_or_modeling","study_design_consensus":null,"genre_codex":"methods","genre_gemma":"empirical","genre_scores_codex":[0.1443464,0.001630558,0.8512841,0.0001019734,0.000270161,0.0005213174,0.0006480743,0.00001078292,0.001186651],"genre_scores_gemma":[0.968661,0.000009414029,0.02791338,0.00008349116,0.0004163064,0.00005639919,0.002562693,0.00001541758,0.0002819511],"genre_candidate":"empirical","genre_consensus":null,"teacher_disagreement_score":0.8243146,"threshold_uncertainty_score":0.5231015,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.008611704137279384,"score_gpt":0.2177930570595161,"score_spread":0.2091813529222367,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}