{"id":"W2021800442","doi":"10.1142/9781860947575_0024","title":"WHOLE GENOME COMPOSITION DISTANCE FOR HIV-1 GENOTYPING","year":2006,"lang":"en","type":"article","venue":"Computational Systems Bioinformatics","topic":"Genomics and Phylogenetic Studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":3,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Alberta","funders":"","keywords":"Genotyping; Genome; Computational biology; Closeness; Human immunodeficiency virus (HIV); Biology; Genetics; Gene; Genotype; Mathematics; Virology","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.001074541,0.0004737985,0.0006317427,0.001403706,0.0007058962,0.0007455645,0.0006729615,0.0006847565,0.001646892],"category_scores_gemma":[0.004955607,0.0002831811,0.0004281278,0.001593862,0.0003978054,0.001066678,0.0009392075,0.0008471386,0.0006860907],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0007103572,"about_ca_system_score_gemma":0.0006237705,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001859493,"about_ca_topic_score_gemma":0.00186805,"domain_scores_codex":[0.9991791,0.0003750287,0.00003892953,0.0001597506,0.0002135969,0.00003363314],"domain_scores_gemma":[0.9985973,0.0007032269,0.00012614,0.000276646,0.0002124443,0.00008416155],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"design_other","study_design_gemma":"simulation_or_modeling","study_design_scores_codex":[0.0009053762,0.0002562759,0.02083739,0.0003945717,0.0002756586,0.0001868846,0.0002735932,0.3172226,0.1266425,0.05075823,0.004207944,0.4780389],"study_design_scores_gemma":[0.00002761677,0.000110217,0.004514324,0.00001114238,0.00002519019,0.0001360237,0.00003767704,0.9386466,0.02950062,0.02192602,0.005022375,0.00004221919],"study_design_candidate":"simulation_or_modeling","study_design_consensus":null,"genre_codex":"methods","genre_gemma":"methods","genre_scores_codex":[0.07801132,0.0005235072,0.9172996,0.0001540402,0.00005350764,0.00008794022,0.0004347785,0.001782072,0.001653348],"genre_scores_gemma":[0.2996056,0.0002507365,0.6972915,0.00007942467,0.00002291568,0.0001485883,0.001121859,0.0002292562,0.00125014],"genre_candidate":"methods","genre_consensus":"methods","teacher_disagreement_score":0.001859493,"threshold_uncertainty_score":0.005682766,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.008611704137279384,"score_gpt":0.2177930570595161,"score_spread":0.2091813529222367,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}