{"id":"W2022022432","doi":"10.1186/1471-213x-11-24","title":"PEX11β induces peroxisomal gene expression and alters peroxisome number during early Xenopus laevis development","year":2011,"lang":"en","type":"article","venue":"BMC Developmental Biology","topic":"Peroxisome Proliferator-Activated Receptors","field":"Biochemistry, Genetics and Molecular Biology","cited_by":9,"is_retracted":false,"has_abstract":true,"ca_institutions":"Western University","funders":"Natural Sciences and Engineering Research Council of Canada","keywords":"Xenopus; Biology; Peroxisome; Developmental biology; Cell biology; Gene expression; Gene; Computational biology; Genetics","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.0001919159,0.0004515226,0.0003284496,0.0001165523,0.0003121353,0.00003600047,0.0003589869,0.0004485689,0.0002487148],"category_scores_gemma":[0.00005178943,0.0004097406,0.00006956483,0.0001360439,0.000237941,0.00004030257,0.0006340744,0.0002007209,0.0001227807],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0000948204,"about_ca_system_score_gemma":0.0002329633,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00002901447,"about_ca_topic_score_gemma":0.00001977957,"domain_scores_codex":[0.9976619,0.0001460202,0.0004783744,0.0008929071,0.0001563197,0.0006644626],"domain_scores_gemma":[0.9992613,0.00001345156,0.0001565398,0.0002388017,0.00006647834,0.0002634137],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0001982677,0.00007711488,0.2424503,0.00002293242,0.00007144115,0.000004674897,0.0009769961,1.349769e-7,0.7556543,0.00001260003,0.00002278864,0.0005084425],"study_design_scores_gemma":[0.000908023,0.0001288634,0.07830729,0.0000257744,0.000008272911,0.0001583686,0.000327959,2.932534e-7,0.9184623,0.00002894167,0.001099743,0.0005441774],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9979983,0.0003350934,0.0001759279,0.000007868814,0.0003219324,0.0002984685,0.00001639626,0.00006168735,0.000784316],"genre_scores_gemma":[0.9593065,0.0001251059,0.03963783,0.0001104086,0.0001363708,0.0001221335,0.0001646679,0.00005729456,0.0003396529],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.164143,"threshold_uncertainty_score":0.9998354,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.02252525605801774,"score_gpt":0.2361485596172853,"score_spread":0.2136233035592675,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}