{"id":"W2022062812","doi":"10.3835/plantgenome2013.10.0034","title":"Rapid Identification of Alleles at the Soybean Maturity Gene E3 using genotyping by Sequencing and a Haplotype‐Based Approach","year":2014,"lang":"en","type":"article","venue":"The Plant Genome","topic":"Soybean genetics and cultivation","field":"Agricultural and Biological Sciences","cited_by":47,"is_retracted":false,"has_abstract":true,"ca_institutions":"Grain Research Centre; Université Laval","funders":"Agriculture and Agri-Food Canada","keywords":"Biology; Germplasm; Genetics; Allele; Locus (genetics); Haplotype; Genotyping; Genotype; Single-nucleotide polymorphism; DNA sequencing; SNP genotyping; Gene; Botany","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":true,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0004176819,0.0003575195,0.0003038476,0.0007708704,0.0003003829,0.0004366876,0.0002863584,0.0003105664,0.0005793381],"category_scores_gemma":[0.0006502604,0.0001998114,0.0003618882,0.0006225977,0.0002711655,0.0001462354,0.0004212112,0.0004435412,0.0003996424],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0004390035,"about_ca_system_score_gemma":0.0008457059,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.03515781,"about_ca_topic_score_gemma":0.1088378,"domain_scores_codex":[0.9996186,0.00003478206,0.00002167458,0.0001228609,0.0001423346,0.00005965546],"domain_scores_gemma":[0.9996333,0.00007179366,0.0001130174,0.00004197572,0.000088465,0.00005147472],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.000161972,0.0000333351,0.02090533,0.00007126934,0.00003585876,0.0001431388,0.0002149541,0.0005565991,0.9526949,0.0001329738,0.0000815333,0.02496815],"study_design_scores_gemma":[0.00006175789,0.0004102786,0.6622289,0.00005667596,0.0002299467,0.001298835,0.0006000529,0.01372017,0.3110951,0.0003068031,0.00991466,0.00007688475],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9455496,0.0004398839,0.0480075,0.00005114261,0.00001070418,0.0002470673,0.003223905,0.0003696722,0.002100464],"genre_scores_gemma":[0.8553674,0.000572788,0.1335304,0.0001369135,0.00000802809,0.0001188371,0.007301149,0.0001397322,0.002824612],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.03515781,"threshold_uncertainty_score":0.06990629,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.04267815196748372,"score_gpt":0.2009299714752782,"score_spread":0.1582518195077945,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}