{"id":"W2022062812","doi":"10.3835/plantgenome2013.10.0034","title":"Rapid Identification of Alleles at the Soybean Maturity Gene E3 using genotyping by Sequencing and a Haplotype‐Based Approach","year":2014,"lang":"en","type":"article","venue":"The Plant Genome","topic":"Soybean genetics and cultivation","field":"Agricultural and Biological Sciences","cited_by":47,"is_retracted":false,"has_abstract":true,"ca_institutions":"Grain Research Centre; Université Laval","funders":"Agriculture and Agri-Food Canada","keywords":"Biology; Germplasm; Genetics; Allele; Locus (genetics); Haplotype; Genotyping; Genotype; Single-nucleotide polymorphism; DNA sequencing; SNP genotyping; Gene; Botany","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":true,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0005422021,0.0000820608,0.00009134336,0.000005597018,0.0003566376,0.00004122835,0.0001718309,0.00004062724,0.00001899668],"category_scores_gemma":[0.00001732665,0.00002633507,0.00003076741,0.00009160442,0.00007505027,0.00002335548,0.00005337989,0.00005314925,0.000002598193],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00002298333,"about_ca_system_score_gemma":0.000004556954,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0001459477,"about_ca_topic_score_gemma":0.00004281953,"domain_scores_codex":[0.9992996,0.0001078755,0.0001704758,0.0001620518,0.0001290983,0.0001308485],"domain_scores_gemma":[0.9996107,0.0001102804,0.0001437262,0.00008128776,0.00002833671,0.00002563196],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.00001255268,0.000009329937,0.000197358,0.000006361439,0.000008051287,4.244844e-8,0.00028822,0.0001974776,0.9973248,0.00006826199,0.00002670596,0.001860883],"study_design_scores_gemma":[0.0004197265,0.0001789853,0.2084415,0.00003052405,0.0001292393,0.00004506241,0.002037062,0.1339051,0.645878,0.001191405,0.007172447,0.0005710344],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9982412,0.0007465243,0.0003695808,0.0002477985,0.00002085337,0.000176568,0.00008055488,0.0000145428,0.0001024002],"genre_scores_gemma":[0.99935,0.00004714807,0.0001525389,0.0001117778,0.00007896261,0.000005014042,0.0002119642,0.000001247147,0.00004133364],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.3514468,"threshold_uncertainty_score":0.2743004,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.04267815196748372,"score_gpt":0.2009299714752782,"score_spread":0.1582518195077945,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}