{"id":"W2022318552","doi":"10.1111/j.1574-6968.2000.tb09313.x","title":"Molecular differentiation of<i>Bifidobacterium</i>species with amplified ribosomal DNA restriction analysis and alignment of short regions of the<i>ldh</i>gene","year":2000,"lang":"en","type":"article","venue":"FEMS Microbiology Letters","topic":"Genomics and Phylogenetic Studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":92,"is_retracted":false,"has_abstract":true,"ca_institutions":"Agriculture and Agri-Food Canada","funders":"","keywords":"Bifidobacterium animalis; Restriction enzyme; Biology; Bifidobacterium longum; Amplified Ribosomal DNA Restriction Analysis; BamHI; Molecular biology; Gene; Genetics; Ribosomal RNA; TaqI; Bifidobacterium; Primer (cosmetics); 16S ribosomal RNA; Polymerase chain reaction; Ribosomal DNA; Lactobacillus; Restriction fragment length polymorphism; Bacteria; Phylogenetic tree; Chemistry","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0003409862,0.0004395728,0.0005352147,0.0009564944,0.00021232,0.0004503476,0.000226285,0.0002847888,0.0008064251],"category_scores_gemma":[0.0006807379,0.0002383473,0.0003990075,0.0007056826,0.0001870622,0.0002722748,0.0002949625,0.0004227383,0.0006952914],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0002150158,"about_ca_system_score_gemma":0.000215287,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001247346,"about_ca_topic_score_gemma":0.001101856,"domain_scores_codex":[0.999764,0.00003794813,0.00003139495,0.00006283677,0.00005180458,0.00005199514],"domain_scores_gemma":[0.9996287,0.00005653586,0.0001066567,0.00002152783,0.0001286131,0.00005800399],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0001102117,0.00001601869,0.001422745,0.00004485279,0.000004674722,0.00003435859,0.00003585955,0.00002130005,0.9950451,0.0000357067,0.0000156142,0.003213671],"study_design_scores_gemma":[0.00004271711,0.001098357,0.1036568,0.00007518538,0.000106831,0.001191438,0.000313128,0.002226199,0.8822244,0.00021696,0.008816389,0.00003156549],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9760795,0.002136756,0.01812968,0.0001285551,0.00004205254,0.0001341298,0.00154078,0.0001179782,0.001690604],"genre_scores_gemma":[0.8969164,0.002377525,0.08751235,0.000128431,0.00002873666,0.0002107989,0.009544769,0.00009192697,0.003189049],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.001247346,"threshold_uncertainty_score":0.002697766,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.005475541579928044,"score_gpt":0.1802501415641496,"score_spread":0.1747745999842216,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}