{"id":"W2022318552","doi":"10.1111/j.1574-6968.2000.tb09313.x","title":"Molecular differentiation of<i>Bifidobacterium</i>species with amplified ribosomal DNA restriction analysis and alignment of short regions of the<i>ldh</i>gene","year":2000,"lang":"en","type":"article","venue":"FEMS Microbiology Letters","topic":"Genomics and Phylogenetic Studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":92,"is_retracted":false,"has_abstract":true,"ca_institutions":"Agriculture and Agri-Food Canada","funders":"","keywords":"Bifidobacterium animalis; Restriction enzyme; Biology; Bifidobacterium longum; Amplified Ribosomal DNA Restriction Analysis; BamHI; Molecular biology; Gene; Genetics; Ribosomal RNA; TaqI; Bifidobacterium; Primer (cosmetics); 16S ribosomal RNA; Polymerase chain reaction; Ribosomal DNA; Lactobacillus; Restriction fragment length polymorphism; Bacteria; Phylogenetic tree; Chemistry","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00005367376,0.000131812,0.0002575583,0.00005999923,0.00004554755,0.000003124834,0.000123431,0.00008389427,0.000005339218],"category_scores_gemma":[0.000004488487,0.00009779099,0.0001270527,0.0001690361,0.0003092789,8.088389e-7,0.0000596661,0.0000382961,1.080237e-7],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.000007251386,"about_ca_system_score_gemma":0.00001384253,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00005027651,"about_ca_topic_score_gemma":0.0000451114,"domain_scores_codex":[0.9992462,0.00007301073,0.0002609486,0.0002413741,0.00004335247,0.0001350988],"domain_scores_gemma":[0.9994712,0.00001066528,0.0001464411,0.0003032426,0.00004887938,0.00001957613],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.00007844619,0.00003521202,0.06923696,0.000008881458,0.0007516532,3.169793e-7,0.00006141057,0.0004029454,0.929267,0.00002180893,0.00006286313,0.0000724408],"study_design_scores_gemma":[0.0001927099,0.0001071959,0.2657393,0.000005810366,0.0002612712,0.00000530369,0.0000190555,0.000002154673,0.733237,0.000004741666,0.0003488623,0.00007663535],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9982668,0.0002497288,0.0008972436,0.0002349566,0.00004532375,0.0001457328,0.0001132153,0.000001390405,0.00004565418],"genre_scores_gemma":[0.9990373,0.0003596818,0.0002647997,0.0001443308,0.00002022859,0.000008122203,0.0001308303,0.000008339831,0.00002636736],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.1965023,"threshold_uncertainty_score":0.3987801,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.005475541579928044,"score_gpt":0.1802501415641496,"score_spread":0.1747745999842216,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}