{"id":"W2022627766","doi":"10.1128/jb.01738-08","title":"Genomic Instability in Regions Adjacent to a Highly Conserved<i>pch</i>Prophage in<i>Escherichia coli</i>O157:H7 Generates Diversity in Expression Patterns of the LEE Pathogenicity Island","year":2009,"lang":"en","type":"article","venue":"Journal of Bacteriology","topic":"Escherichia coli research studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":18,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Calgary","funders":"","keywords":"Biology; Prophage; Pathogenicity island; Escherichia coli; Genetics; Pathogenicity; Genome instability; Microbiology; Gene; DNA; Bacteriophage","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001370936,0.0001616666,0.0001449971,0.0002560042,0.0001083101,0.000324,0.0001498131,0.0001991545,0.000541781],"category_scores_gemma":[0.0003025828,0.000143709,0.0001816377,0.0001742861,0.0002673194,0.00009240597,0.0002409526,0.0003892577,0.0001231668],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.000234436,"about_ca_system_score_gemma":0.0001095884,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0005098119,"about_ca_topic_score_gemma":0.0009706611,"domain_scores_codex":[0.9997835,0.00003447434,0.00001441842,0.00007442637,0.00004877496,0.00004444981],"domain_scores_gemma":[0.9995728,0.0001156611,0.000180346,0.0000384088,0.00002728794,0.00006551995],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.00005001179,0.00001407786,0.001050196,0.000007664079,0.000004684243,0.00001699939,0.00001542048,0.00003375004,0.9980857,0.00001943441,0.000005900181,0.0006961852],"study_design_scores_gemma":[0.00001669478,0.000637899,0.2781574,0.00001368399,0.00004456428,0.0005166403,0.0001525355,0.001944309,0.7174825,0.0001417117,0.0008693766,0.00002274131],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.997857,0.0001073112,0.001541583,0.00001692936,0.000003441626,0.000008397169,0.0001632108,0.0000300366,0.0002719512],"genre_scores_gemma":[0.9975903,0.00005477003,0.001446341,0.00003303019,0.000004657175,0.00001395373,0.000504191,0.00002272777,0.0003300225],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.000541781,"threshold_uncertainty_score":0.001812398,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01848577042868836,"score_gpt":0.2537111998249787,"score_spread":0.2352254293962903,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}