{"id":"W2022681088","doi":"10.1139/w08-158","title":"Comparative genomic analysis of<i>Acidithiobacillus ferrooxidans</i>strains using the<i>A. ferrooxidans</i>ATCC 23270 whole-genome oligonucleotide microarray","year":2009,"lang":"en","type":"article","venue":"Canadian Journal of Microbiology","topic":"Metal Extraction and Bioleaching","field":"Engineering","cited_by":12,"is_retracted":false,"has_abstract":true,"ca_institutions":"","funders":"National Key Research and Development Program of China; National Natural Science Foundation of China","keywords":"ORFS; Biology; Phylogenetic tree; Gene; GC-content; Genome; Strain (injury); Acidithiobacillus; genomic DNA; Genetics; Bioleaching; Microbiology; Open reading frame; Chemistry; Acidithiobacillus ferrooxidans; Peptide sequence","routes":{"ca_aff":false,"ca_fund":false,"ca_venue":true,"about_ca":false,"invisible_to_affiliation_only":true},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001360372,0.0004774222,0.0003736674,0.0006406793,0.0001922013,0.00029059,0.0001606192,0.0002628381,0.0006291227],"category_scores_gemma":[0.0002555258,0.0002052007,0.0004125477,0.0005717872,0.0001318862,0.0001727741,0.0001745628,0.0002590389,0.0002598721],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.000216189,"about_ca_system_score_gemma":0.0001862377,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001345284,"about_ca_topic_score_gemma":0.001757354,"domain_scores_codex":[0.9998314,0.00002504438,0.00001352089,0.0000570035,0.00003432413,0.00003869824],"domain_scores_gemma":[0.9998974,0.00002776063,0.00002528165,0.000006359574,0.00002320063,0.00002003727],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0000424165,0.00001244069,0.0003385101,0.00001841689,0.000004809911,0.00001392107,0.00002084888,0.00004354031,0.9984726,0.00001445503,0.000009313876,0.001008823],"study_design_scores_gemma":[0.00002283701,0.0009246126,0.1316855,0.00002191326,0.0001247011,0.0006320689,0.0002714556,0.003673303,0.8590336,0.0001417937,0.003436418,0.00003174949],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9927831,0.0002918263,0.004440724,0.00004892074,0.000008798114,0.0000331349,0.001636447,0.00005757881,0.0006994096],"genre_scores_gemma":[0.9611319,0.0007749504,0.02602018,0.0001086658,0.00001849908,0.00017626,0.009686505,0.00003803193,0.002045156],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.001345284,"threshold_uncertainty_score":0.002674878,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.02587991031788316,"score_gpt":0.2405026768206493,"score_spread":0.2146227665027662,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}