{"id":"W2022846158","doi":"10.1089/10665270360688129","title":"Tests for Gene Clustering","year":2003,"lang":"en","type":"article","venue":"Journal of Computational Biology","topic":"Genome Rearrangement Algorithms","field":"Biochemistry, Genetics and Molecular Biology","cited_by":77,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Ottawa","funders":"National Human Genome Research Institute","keywords":"Genome; Biology; Gene; Gene duplication; Comparative genomics; Horizontal gene transfer; Gene cluster; Genetics; Genomics; Evolutionary biology; Gene family; Computational biology; Genome evolution","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000256245,0.00006663587,0.0001102026,0.00005544101,0.00003294445,0.000006967548,0.00008896737,0.00006314879,0.00001145337],"category_scores_gemma":[0.0001303417,0.00005855094,0.00008763651,0.00003485303,0.00002891638,0.00000206583,0.00001634772,0.00003931405,0.000002485147],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00001087766,"about_ca_system_score_gemma":0.00008585517,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":2.280142e-7,"about_ca_topic_score_gemma":7.05149e-7,"domain_scores_codex":[0.9994662,0.00004472851,0.0002312062,0.00009018776,0.00005328492,0.00011441],"domain_scores_gemma":[0.9994487,0.00004142995,0.0001658038,0.00005233834,0.0002492057,0.00004253494],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"not_applicable","study_design_scores_codex":[0.000192085,0.0001527977,0.007137284,0.00002682711,0.0003792837,0.000005935929,0.00005063255,0.05767652,0.9196212,0.002238329,0.003101883,0.009417227],"study_design_scores_gemma":[0.01121305,0.007830634,0.02546885,0.00003916196,0.0001530552,0.002642298,0.0001406498,0.004604133,0.1902722,0.0902853,0.6663705,0.0009801615],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.5062876,0.0009252855,0.4918031,0.0001820679,0.0004105582,0.0001054366,0.00001143166,0.000002180526,0.0002723591],"genre_scores_gemma":[0.8828136,0.00003101401,0.1165715,0.0001769031,0.0002818019,0.000003235677,0.00003922759,0.000008774494,0.00007388606],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.729349,"threshold_uncertainty_score":0.2387638,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.0198886956447467,"score_gpt":0.2979448129065418,"score_spread":0.2780561172617951,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}