{"id":"W2023046869","doi":"10.1126/science.1183605","title":"A Catalog of Reference Genomes from the Human Microbiome","year":2010,"lang":"en","type":"article","venue":"Science","topic":"Gut microbiota and health","field":"Biochemistry, Genetics and Molecular Biology","cited_by":717,"is_retracted":false,"has_abstract":true,"ca_institutions":"","funders":"National Human Genome Research Institute; Canadian Institutes of Health Research; National Institutes of Health; National Institute of Allergy and Infectious Diseases; Broad Institute; Vlaamse regering; Universiteit Gent; Crohn's and Colitis Foundation of Canada; Crohn's and Colitis Foundation","keywords":"Microbiome; Computational biology; Genome; Human genome; Human microbiome; Biology; Evolutionary biology; Data science; Genetics; Computer science; Gene","routes":{"ca_aff":false,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":true},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.002423913,0.001493454,0.001537288,0.0135654,0.001285193,0.001745816,0.001621175,0.001279019,0.01272709],"category_scores_gemma":[0.0077597,0.0005746227,0.0009293358,0.01855051,0.0002869575,0.001277573,0.001624761,0.001042029,0.01185037],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0005878549,"about_ca_system_score_gemma":0.00255269,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00311638,"about_ca_topic_score_gemma":0.005165633,"domain_scores_codex":[0.9983668,0.0003189059,0.0002882771,0.0003727325,0.0005134298,0.000139863],"domain_scores_gemma":[0.9959372,0.0009268213,0.000645905,0.0009805297,0.001149279,0.000360265],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"design_other","study_design_gemma":"not_applicable","study_design_scores_codex":[0.002744276,0.00048476,0.01958353,0.01391601,0.0006073521,0.00144888,0.0009656397,0.002994101,0.2052557,0.008336649,0.2156087,0.5280543],"study_design_scores_gemma":[0.000232737,0.0004736169,0.05609171,0.00155261,0.0004996973,0.00366156,0.0003299522,0.002758807,0.0364759,0.004964481,0.8927813,0.0001776329],"study_design_candidate":"not_applicable","study_design_consensus":null,"genre_codex":"dataset","genre_gemma":"dataset","genre_scores_codex":[0.06731635,0.03488444,0.07411397,0.001150371,0.0005796704,0.0007706277,0.7852914,0.01041631,0.02547685],"genre_scores_gemma":[0.01389689,0.006314414,0.07132968,0.0002096766,0.00006618588,0.0003821709,0.9049024,0.0005513515,0.002347256],"genre_candidate":"dataset","genre_consensus":"dataset","teacher_disagreement_score":0.0135654,"threshold_uncertainty_score":0.04257631,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01462414533951075,"score_gpt":0.287514586168599,"score_spread":0.2728904408290883,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}