{"id":"W2023303471","doi":"10.1371/journal.pone.0091092","title":"Evidence of a Putative Deep Sea Specific Microbiome in Marine Sponges","year":2014,"lang":"en","type":"article","venue":"PLoS ONE","topic":"Marine Sponges and Natural Products","field":"Biochemistry, Genetics and Molecular Biology","cited_by":69,"is_retracted":false,"has_abstract":true,"ca_institutions":"","funders":"Queen's University; Queen's University Belfast","keywords":"Sponge; Archaea; Biology; Pyrosequencing; Thaumarchaeota; Metagenomics; Proteobacteria; Microbiome; Microbial population biology; Deep sea; 16S ribosomal RNA; Ecology; Zoology; Bacteria; Botany; Gene; Fishery; Genetics","routes":{"ca_aff":false,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":true},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002286516,0.0001044187,0.0001824946,0.00006153336,0.00001393102,0.000006434609,0.0001543134,0.00007081924,0.00006013063],"category_scores_gemma":[0.0002195271,0.00009596359,0.00003455129,0.0001414373,0.00005974808,0.000004280925,0.0001855997,0.0000863352,0.00001185656],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.000009240529,"about_ca_system_score_gemma":0.00001358196,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00003458821,"about_ca_topic_score_gemma":0.00006618266,"domain_scores_codex":[0.9992173,0.00006380548,0.0001688383,0.0002828648,0.0001050924,0.00016208],"domain_scores_gemma":[0.9994925,0.00002757078,0.00007121188,0.0002708315,0.0001007114,0.00003715068],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0001764794,0.000253496,0.01262977,0.0001234725,0.00004035337,0.000001625956,0.00002983025,0.000003880123,0.981599,0.0000391222,0.00004716431,0.005055802],"study_design_scores_gemma":[0.0003008777,0.0003513996,0.03287185,0.00008859394,0.00001469519,0.000002449678,0.00001037057,0.00005400878,0.9654139,0.000117956,0.0006434087,0.0001304614],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9969721,0.001631662,0.00001954254,0.0004364654,0.0000255857,0.0001592645,0.000005080739,0.000005388521,0.000744877],"genre_scores_gemma":[0.9943498,0.0009964885,0.003582299,0.00006215752,0.000144321,0.000006090735,0.00005978294,0.00001188372,0.0007871097],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.02024207,"threshold_uncertainty_score":0.3913282,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.03128740584577637,"score_gpt":0.2363813791732618,"score_spread":0.2050939733274854,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}