{"id":"W2023849146","doi":"10.1016/j.tube.2004.02.002","title":"The Mycobacterium tuberculosis complex transcriptome of attenuation","year":2004,"lang":"en","type":"article","venue":"Tuberculosis","topic":"Tuberculosis Research and Epidemiology","field":"Medicine","cited_by":52,"is_retracted":false,"has_abstract":false,"ca_institutions":"McGill University Health Centre","funders":"National Heart, Lung, and Blood Institute; Canadian Institutes of Health Research; National Institutes of Health; McGill University","keywords":"Virulence; Mycobacterium tuberculosis; Biology; Transcriptome; Phenotype; Gene; Genetics; Tuberculosis; Mutant; Gene expression; Microbiology; Medicine","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002770181,0.0002290496,0.0005027055,0.0002261041,0.0004481022,0.001208101,0.0001338932,0.0004954495,0.001262469],"category_scores_gemma":[0.0008450304,0.0002739081,0.0002501982,0.000326536,0.0003274145,0.0007320741,0.0006905724,0.0009972046,0.0006046466],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0004880737,"about_ca_system_score_gemma":0.00043228,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001058291,"about_ca_topic_score_gemma":0.001096418,"domain_scores_codex":[0.9997424,0.00003794069,0.00001015592,0.0000710411,0.00007610506,0.00006223195],"domain_scores_gemma":[0.9995714,0.0001155509,0.00006970529,0.00005453098,0.0001164814,0.00007226634],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0003614853,0.00002000874,0.006804002,0.0001153598,0.00001620443,0.0001059372,0.0003033509,0.0003983091,0.9808418,0.0007185519,0.000847939,0.009467051],"study_design_scores_gemma":[0.0000584367,0.0004682358,0.5843225,0.0002316084,0.0001288157,0.001557947,0.002763093,0.0110346,0.347315,0.005381798,0.04665311,0.00008493898],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9853104,0.004307048,0.003195108,0.001057858,0.00008899881,0.00001624074,0.001996068,0.00008644078,0.003941745],"genre_scores_gemma":[0.9899829,0.001233892,0.001516558,0.0003252024,0.00005271797,0.00002242833,0.004051163,0.00006511768,0.002750048],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.001262469,"threshold_uncertainty_score":0.004223347,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.03792383134949324,"score_gpt":0.3194247044344738,"score_spread":0.2815008730849806,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}