{"id":"W2023849146","doi":"10.1016/j.tube.2004.02.002","title":"The Mycobacterium tuberculosis complex transcriptome of attenuation","year":2004,"lang":"en","type":"article","venue":"Tuberculosis","topic":"Tuberculosis Research and Epidemiology","field":"Medicine","cited_by":52,"is_retracted":false,"has_abstract":false,"ca_institutions":"McGill University Health Centre","funders":"National Heart, Lung, and Blood Institute; Canadian Institutes of Health Research; National Institutes of Health; McGill University","keywords":"Virulence; Mycobacterium tuberculosis; Biology; Transcriptome; Phenotype; Gene; Genetics; Tuberculosis; Mutant; Gene expression; Microbiology; Medicine","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0009121787,0.0002873821,0.0006629844,0.0001887235,0.0002921309,0.00002918878,0.0002738405,0.0001947992,0.0002831373],"category_scores_gemma":[0.0005573435,0.0001927035,0.0004469012,0.0005882232,0.0004504535,0.0001491402,0.00006524928,0.0003895998,0.0002295541],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.000232231,"about_ca_system_score_gemma":0.0001467217,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0008587145,"about_ca_topic_score_gemma":0.0001514279,"domain_scores_codex":[0.9972072,0.0002136479,0.0007903596,0.0004261623,0.0006062203,0.0007564744],"domain_scores_gemma":[0.9980548,0.0003655712,0.0001404288,0.0007608312,0.0003435897,0.000334758],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.001497868,0.001102623,0.08577532,0.0006833504,0.001873952,0.00004922509,0.001422763,0.0002578848,0.8458834,0.01164497,0.0200849,0.02972369],"study_design_scores_gemma":[0.003855716,0.001090341,0.9263569,0.000210112,0.0005133943,0.0002457644,0.0004181195,0.0003439289,0.02683101,0.002299269,0.03741278,0.0004226875],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9275519,0.001022321,0.000272166,0.06458386,0.0002194594,0.0007187532,0.00004914191,0.000111886,0.005470478],"genre_scores_gemma":[0.9943912,0.002198339,0.0008129643,0.001945236,0.0002189392,0.00009774749,0.0001153008,0.00004456548,0.0001757083],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.8405815,"threshold_uncertainty_score":0.785822,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.03792383134949324,"score_gpt":0.3194247044344738,"score_spread":0.2815008730849806,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}