{"id":"W2024499099","doi":"10.1371/journal.ppat.1003363","title":"Global Organization of a Positive-strand RNA Virus Genome","year":2013,"lang":"en","type":"article","venue":"PLoS Pathogens","topic":"Plant Virus Research Studies","field":"Agricultural and Biological Sciences","cited_by":45,"is_retracted":false,"has_abstract":true,"ca_institutions":"York University","funders":"Natural Sciences and Engineering Research Council of Canada","keywords":"Genome; RNA; Biology; Computational biology; Nucleic acid secondary structure; Genetics; Nucleic acid structure; Structural genomics; Non-coding RNA; Protein structure; Gene","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00004793784,0.00008288767,0.0001328732,0.000006167612,0.0001082952,0.00002676578,0.0001446291,0.00004342652,0.0007319379],"category_scores_gemma":[0.0001098857,0.00003094599,0.00003343072,0.0003883234,0.0000528365,0.000084096,0.00007464487,0.00003501889,0.0001749352],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00002423157,"about_ca_system_score_gemma":0.000005949137,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0002807137,"about_ca_topic_score_gemma":0.0001494807,"domain_scores_codex":[0.9992531,0.000045161,0.0001258141,0.0001528628,0.0002170163,0.0002060488],"domain_scores_gemma":[0.9995816,0.0000649387,0.00004610499,0.00003274732,0.00020108,0.00007349964],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.000003694641,0.00007784608,0.01114384,0.000004504787,0.00002478549,0.000003881977,0.00005456837,0.000001234118,0.9865198,0.0000274565,0.000158073,0.001980367],"study_design_scores_gemma":[0.00007426116,0.0001196992,0.9140938,0.00000943926,0.00001117194,0.00000334242,0.00008434458,0.00002379807,0.08512315,0.0001835736,0.0001672673,0.0001061352],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9961035,0.00009237114,0.000004135166,0.0002661724,0.00001343962,0.0002279661,0.002210122,0.00003297503,0.001049276],"genre_scores_gemma":[0.9994811,0.0001345293,0.00006133869,0.00005368579,0.00006264976,0.000008533141,0.0001366764,5.532123e-7,0.00006092606],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.90295,"threshold_uncertainty_score":0.8014207,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.02278625547981349,"score_gpt":0.2204240094990058,"score_spread":0.1976377540191923,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}