{"id":"W2024844766","doi":"10.3390/v5071758","title":"Chromatin Dynamics during Lytic Infection with Herpes Simplex Virus 1","year":2013,"lang":"en","type":"review","venue":"Viruses","topic":"Herpesvirus Infections and Treatments","field":"Medicine","cited_by":40,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Alberta","funders":"Canadian Institutes of Health Research","keywords":"Chromatin; Biology; Histone-modifying enzymes; Chromatin immunoprecipitation; ChIA-PET; ChIP-on-chip; Cell biology; Lytic cycle; Chromatin remodeling; Transcription (linguistics); Micrococcal nuclease; ChIP-sequencing; Scaffold/matrix attachment region; Histone; Genetics; Gene; Gene expression; Virus; Nucleosome; Promoter","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["metaepi_narrow","insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.00006946598,0.0006027589,0.001485662,0.0003760396,0.0002077917,0.00009000542,0.00007160402,0.0003519678,0.0005267035],"category_scores_gemma":[0.00003043175,0.0003970526,0.0003283088,0.000495113,0.00008781716,0.0001836872,0.00005306141,0.000293747,0.001437688],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0007302662,"about_ca_system_score_gemma":0.0002496128,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.004185894,"about_ca_topic_score_gemma":0.0007910852,"domain_scores_codex":[0.998246,0.00009807334,0.0005570969,0.0004653136,0.0002513507,0.0003822061],"domain_scores_gemma":[0.9988006,0.00008908448,0.0003432889,0.0005431965,0.00007344464,0.0001503717],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"design_other","study_design_gemma":"not_applicable","study_design_scores_codex":[0.00001011808,0.0003954725,0.0003583233,0.009842629,0.0007959401,0.00007392954,0.000006603648,0.000002131479,0.00000184763,0.000051369,0.0002610122,0.9882006],"study_design_scores_gemma":[0.0006585405,0.0001889275,0.000450603,0.008456578,0.002269515,0.0003317315,0.000002658655,0.00002526292,0.0000558023,0.000008914874,0.9871662,0.0003853102],"study_design_candidate":"design_other","study_design_consensus":null,"genre_codex":"review","genre_gemma":"review","genre_scores_codex":[0.02066928,0.9731374,0.00006878537,0.000006413016,0.0002129654,0.002015251,0.0001558714,0.0004552271,0.003278769],"genre_scores_gemma":[0.0007369487,0.9963159,0.0002758249,0.00004242303,0.0003010468,0.0005495491,0.0002586749,0.0001661782,0.001353444],"genre_candidate":"review","genre_consensus":"review","teacher_disagreement_score":0.9878153,"threshold_uncertainty_score":0.9998481,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.06259703815823071,"score_gpt":0.3583091806109125,"score_spread":0.2957121424526818,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}