{"id":"W2025389666","doi":"10.1371/journal.ppat.0030042","title":"Transcriptional Regulation by Protein Kinase A in Cryptococcus neoformans","year":2007,"lang":"en","type":"article","venue":"PLoS Pathogens","topic":"Fungal Infections and Studies","field":"Medicine","cited_by":114,"is_retracted":false,"has_abstract":true,"ca_institutions":"Response Biomedical (Canada); Canada's Michael Smith Genome Sciences Centre; University of British Columbia","funders":"National Institute of Allergy and Infectious Diseases; Canada's Michael Smith Genome Sciences Centre","keywords":"Biology; Protein kinase A; Cryptococcus neoformans; Biochemistry; Fungal protein; Gene; Cell biology; Mutant; Kinase; Genetics","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001894291,0.00009571658,0.0001474658,0.000125558,0.00008107958,0.000006439365,0.00002091118,0.00006638302,0.0001628188],"category_scores_gemma":[0.00004120319,0.00008416027,0.00005979504,0.0002229346,0.00003508857,0.00006151089,0.000007251326,0.0001294022,0.000043843],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00008796982,"about_ca_system_score_gemma":0.00002305422,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00002325599,"about_ca_topic_score_gemma":0.00006717437,"domain_scores_codex":[0.9992204,0.00001400102,0.0002201616,0.0001482155,0.0001723764,0.0002248942],"domain_scores_gemma":[0.9997105,0.00001795221,0.00002877508,0.0001091255,0.0000652469,0.00006842952],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.0001236361,0.0004352964,0.033509,0.00005229069,0.00002447481,0.00003658242,0.0004128737,0.000003425483,0.9624731,0.0008330678,0.0004921149,0.001604118],"study_design_scores_gemma":[0.002585783,0.0006558864,0.861425,0.0002560477,0.00008696727,0.00003290539,0.0004004771,0.0006876946,0.1152719,0.0005095289,0.01779433,0.000293528],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9907224,0.0001939647,0.001403283,0.0003897006,0.00004784459,0.0006674411,0.00003213166,0.00005506863,0.006488155],"genre_scores_gemma":[0.9976196,0.00001177233,0.0009312834,0.0001254446,0.00009443675,0.0000886077,0.00004787894,0.00001207785,0.001068842],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.8472012,"threshold_uncertainty_score":0.3431956,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.0180385317654973,"score_gpt":0.2533728518883374,"score_spread":0.2353343201228401,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}