{"id":"W2025445118","doi":"10.1371/journal.pone.0003872","title":"The POM Monoclonals: A Comprehensive Set of Antibodies to Non-Overlapping Prion Protein Epitopes","year":2008,"lang":"en","type":"article","venue":"PLoS ONE","topic":"Prion Diseases and Protein Misfolding","field":"Biochemistry, Genetics and Molecular Biology","cited_by":191,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Alberta","funders":"Eidgenössische Technische Hochschule Zürich; Alberta Prion Research Institute; Universität Zürich; European Commission; Javna Agencija za Raziskovalno Dejavnost RS; Schweizerischer Nationalfonds zur Förderung der Wissenschaftlichen Forschung; National Science Foundation","keywords":"Epitope; Epitope mapping; Monoclonal antibody; Antibody; Immunoprecipitation; Avidity; Paratope; Molecular biology; Conformational epitope; Chemistry; Virology; Biology; Immunology","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00007597009,0.0001118299,0.0001641035,0.00002396625,0.0001911892,0.00001355092,0.0001896416,0.00005645706,0.000007384154],"category_scores_gemma":[0.0001256508,0.00008920395,0.00007164947,0.00007097513,0.00007116513,0.000003601851,0.0001647539,0.00005333616,0.00001063893],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.000007319107,"about_ca_system_score_gemma":0.00005323804,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00003252318,"about_ca_topic_score_gemma":0.000006079053,"domain_scores_codex":[0.9991897,0.00004586975,0.000184922,0.0002089522,0.0001825812,0.0001879931],"domain_scores_gemma":[0.9993717,0.00002110914,0.0000886991,0.00029007,0.0001559236,0.00007246444],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.000129281,0.00009668736,0.001427797,0.00006220231,0.0001532185,0.000002700856,0.0001060207,0.00001133681,0.994715,0.00002138867,0.000289884,0.002984525],"study_design_scores_gemma":[0.0002334377,0.0002290283,0.009581057,0.0001758441,0.00002168367,0.000002390125,0.00008513557,0.00005794425,0.9852937,0.00006546597,0.004113856,0.0001404694],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9931641,0.005465302,0.0001934277,0.0004478448,0.00001529561,0.0005804873,0.00002654594,0.000008778062,0.00009826949],"genre_scores_gemma":[0.993532,0.003438782,0.002391967,0.0001565779,0.0001493261,0.0000645895,0.00002286655,0.00001409039,0.0002298186],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.009421271,"threshold_uncertainty_score":0.3637631,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.04820395705124467,"score_gpt":0.2588607577840817,"score_spread":0.210656800732837,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}