{"id":"W2025508015","doi":"10.1093/nar/gkr1238","title":"Differential effects of hnRNP D/AUF1 isoforms on HIV-1 gene expression","year":2011,"lang":"en","type":"article","venue":"Nucleic Acids Research","topic":"RNA Research and Splicing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":57,"is_retracted":false,"has_abstract":true,"ca_institutions":"McGill University; Université de Sherbrooke; University of Toronto","funders":"National Institutes of Health; McGill University; Canadian Institutes of Health Research; National Institute of Allergy and Infectious Diseases; Ontario HIV Treatment Network; Université Laval","keywords":"Biology; Gene isoform; Gene expression; Cytoplasm; Molecular biology; Viral replication; Regulation of gene expression; RNA; Gene; Cell biology; Virus; Virology; Genetics","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001330761,0.0002389674,0.0002428725,0.0002004392,0.0001918382,0.000307276,0.0001478803,0.000181268,0.0008511656],"category_scores_gemma":[0.0001484157,0.0001232604,0.0001852468,0.0001154908,0.0002319711,0.0001572082,0.0001672923,0.0002753881,0.0002107637],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0003203902,"about_ca_system_score_gemma":0.0001710963,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001128598,"about_ca_topic_score_gemma":0.002123705,"domain_scores_codex":[0.9998578,0.00002417685,0.00001634085,0.00003220866,0.00003581172,0.00003373923],"domain_scores_gemma":[0.9999181,0.00002880857,0.0000132883,0.00001127112,0.00001073019,0.0000177921],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0001001564,0.00001118131,0.0002853834,0.00002363461,0.000003560807,0.00002993701,0.000007277261,0.00003448941,0.9987128,0.00004283636,0.0000137006,0.0007351393],"study_design_scores_gemma":[0.000007060148,0.00007466114,0.004098353,0.000002120083,0.00001414856,0.0001293916,0.00002808425,0.0004020479,0.9943335,0.00002314876,0.0008846694,0.000002734042],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9971892,0.0009459677,0.0005576224,0.00004505859,0.00001033321,0.000008998732,0.0002476146,0.00002217915,0.0009729361],"genre_scores_gemma":[0.9953983,0.0008148996,0.001450754,0.00005750482,0.000004975856,0.0000165972,0.0005066941,0.00001723831,0.001733046],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.001128598,"threshold_uncertainty_score":0.002847373,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.03237231235409403,"score_gpt":0.313772786498005,"score_spread":0.281400474143911,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}