{"id":"W2025682644","doi":"10.1371/journal.pone.0020774","title":"Phylogeny of Parasitic Parabasalia and Free-Living Relatives Inferred from Conventional Markers vs. Rpb1, a Single-Copy Gene","year":2011,"lang":"en","type":"article","venue":"PLoS ONE","topic":"Insect symbiosis and bacterial influences","field":"Agricultural and Biological Sciences","cited_by":57,"is_retracted":false,"has_abstract":true,"ca_institutions":"","funders":"National Institute of Allergy and Infectious Diseases; Canadian Institute for Advanced Research; National Institutes of Health; National Science Foundation","keywords":"Phylogenetics; Biology; Genetics; Gene; Evolutionary biology","routes":{"ca_aff":false,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":true},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001364721,0.0003420408,0.0002294472,0.001288873,0.000463601,0.0005648542,0.0002879457,0.0003736732,0.0008975703],"category_scores_gemma":[0.0003743903,0.0002060235,0.0001727112,0.0007940968,0.0004061342,0.0003253713,0.0003182747,0.000305218,0.0004969842],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0002659746,"about_ca_system_score_gemma":0.000219509,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0011047,"about_ca_topic_score_gemma":0.001601098,"domain_scores_codex":[0.9998474,0.00001580299,0.00001037508,0.00007094374,0.00002591417,0.00002958261],"domain_scores_gemma":[0.9995978,0.000080461,0.0001560673,0.00003584211,0.00006063225,0.00006917133],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.0008133083,0.00007837843,0.206696,0.0003178956,0.00008856801,0.0006255254,0.001147251,0.0004135322,0.7714366,0.0004282163,0.0001435737,0.01781109],"study_design_scores_gemma":[0.00003211945,0.0003901079,0.9628189,0.0001122709,0.000120884,0.00280922,0.001717007,0.002416394,0.02177909,0.0003657026,0.007413597,0.00002473634],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9974245,0.0004386441,0.0007229598,0.00001596657,0.000003917566,0.00001644478,0.000362383,0.00002372178,0.0009915025],"genre_scores_gemma":[0.9966066,0.0002451042,0.001702042,0.00001400063,0.000004496478,0.00001791027,0.001056199,0.00001508285,0.000338509],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.001288873,"threshold_uncertainty_score":0.003002644,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.08370334415464971,"score_gpt":0.2008926913709255,"score_spread":0.1171893472162758,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}