{"id":"W2025688852","doi":"10.7164/antibiotics.56.135","title":"Functional Annotation of Putative Aminoglycoside Antibiotic Modifying Proteins in Mycobacterium tuberculosis H37Rv.","year":2003,"lang":"en","type":"article","venue":"The Journal of Antibiotics","topic":"Tuberculosis Research and Epidemiology","field":"Medicine","cited_by":25,"is_retracted":false,"has_abstract":true,"ca_institutions":"McMaster University; McMaster University Medical Centre","funders":"Canadian Institutes of Health Research","keywords":"Aminoglycoside; Biology; Acetyltransferase; Gene; Genetics; Aminocyclitol; Acetyltransferases; Open reading frame; Bacterial genome size; Mycobacterium tuberculosis; Genome; Peptide sequence; Microbiology; Antibiotics; Tuberculosis","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.002120447,0.0001491255,0.0005269872,0.0003406329,0.00005985482,0.000009140111,0.00010894,0.0001140579,0.0000329748],"category_scores_gemma":[0.001956608,0.0000955346,0.0001532664,0.0004483114,0.0002095387,0.0001518606,0.0000251441,0.0005588398,0.00001028865],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001152923,"about_ca_system_score_gemma":0.0002432846,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0000656847,"about_ca_topic_score_gemma":0.00001359995,"domain_scores_codex":[0.997716,0.0005863848,0.000816498,0.0001164943,0.0004340353,0.0003306669],"domain_scores_gemma":[0.998228,0.0005120005,0.0004626308,0.0001920808,0.0004770125,0.0001282535],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.001651217,0.0008155485,0.274535,0.0004318889,0.0004775954,0.0001178339,0.001361031,0.003823975,0.7133602,0.00116792,0.0008211663,0.001436593],"study_design_scores_gemma":[0.001940848,0.001403904,0.6375763,0.0003794896,0.0002146509,0.0009821359,0.001058301,0.001425911,0.3542338,0.0005503532,0.000110694,0.0001235887],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9945421,0.000443968,0.0018714,0.00206531,0.0001757484,0.0002974363,0.000008130368,0.000005284778,0.0005906897],"genre_scores_gemma":[0.9963543,0.0008455932,0.002374116,0.0002430347,0.0001008056,3.708629e-8,0.000006927945,0.00001721197,0.00005790347],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.3630414,"threshold_uncertainty_score":0.3895788,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.03883518099867701,"score_gpt":0.310150647545934,"score_spread":0.271315466547257,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}