{"id":"W2026234214","doi":"10.1021/bi801742r","title":"pH-Responsive DNA-Binding Activity of Helicobacter pylori NikR","year":2009,"lang":"en","type":"article","venue":"Biochemistry","topic":"Helicobacter pylori-related gastroenterology studies","field":"Medicine","cited_by":38,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Toronto","funders":"Canadian Institutes of Health Research","keywords":"Repressor; Chemistry; DNA; Activator (genetics); Biochemistry; Binding site; Transcription (linguistics); DNA-binding domain; Molecular biology; Electrophoretic mobility shift assay; Transcription factor; Gene; Biology","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001524445,0.0002636668,0.0005029743,0.00009192446,0.00006592229,0.000008437622,0.000136943,0.000268268,0.00006981491],"category_scores_gemma":[0.0003442464,0.0002449779,0.0001652007,0.0002222302,0.0001725139,0.00006620109,0.00007013868,0.0003648599,0.00004555377],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001328182,"about_ca_system_score_gemma":0.00009449651,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.000005197534,"about_ca_topic_score_gemma":7.04651e-7,"domain_scores_codex":[0.9985726,0.00003329382,0.0003240231,0.0003962879,0.0002453625,0.0004284605],"domain_scores_gemma":[0.9988835,0.00005948342,0.0001883981,0.0004812884,0.0002109345,0.0001764347],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0008116937,0.0002435785,0.02367279,0.00006492696,0.0002437629,0.00005449128,0.0001443563,1.43403e-7,0.9701362,0.000002583139,0.001601785,0.003023711],"study_design_scores_gemma":[0.001318389,0.0003711723,0.1117344,0.000176001,0.0001387889,0.0001047278,0.00008319037,0.000005306465,0.8853871,0.000008267937,0.0005347494,0.0001378754],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9937404,0.000160281,0.00002106242,0.003459654,0.0001492569,0.0001729616,0.00003220936,0.00009271449,0.002171483],"genre_scores_gemma":[0.9974143,0.00005820099,0.0002425234,0.0005718972,0.0002503814,0.000009076136,0.00002291075,0.00001886617,0.00141188],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.08806162,"threshold_uncertainty_score":0.9989911,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.0155512483590118,"score_gpt":0.2696899920185818,"score_spread":0.25413874365957,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}