{"id":"W2026234214","doi":"10.1021/bi801742r","title":"pH-Responsive DNA-Binding Activity of Helicobacter pylori NikR","year":2009,"lang":"en","type":"article","venue":"Biochemistry","topic":"Helicobacter pylori-related gastroenterology studies","field":"Medicine","cited_by":38,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Toronto","funders":"Canadian Institutes of Health Research","keywords":"Repressor; Chemistry; DNA; Activator (genetics); Biochemistry; Binding site; Transcription (linguistics); DNA-binding domain; Molecular biology; Electrophoretic mobility shift assay; Transcription factor; Gene; Biology","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001877119,0.0002895971,0.0003801987,0.0002785189,0.00008819344,0.0002339887,0.0001782584,0.0002201951,0.002058746],"category_scores_gemma":[0.0002713825,0.000163181,0.0003072438,0.0001113272,0.0001772487,0.0001308832,0.0002459082,0.0003016249,0.0008762497],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0003762478,"about_ca_system_score_gemma":0.0001335888,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0008598816,"about_ca_topic_score_gemma":0.0007055602,"domain_scores_codex":[0.9997008,0.00004446017,0.0000211934,0.00006156064,0.000109592,0.0000623751],"domain_scores_gemma":[0.9997914,0.00003728138,0.00004228423,0.00002021872,0.00004681496,0.00006197504],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.00008514863,0.00001604859,0.0002341251,0.00003835326,0.000002491755,0.00001325285,0.00001023951,0.00001664261,0.9989246,0.00001179883,0.00001776851,0.0006295525],"study_design_scores_gemma":[0.0000121694,0.0003234928,0.0245603,0.000008754696,0.00001045263,0.0002759094,0.00004747082,0.0008642355,0.9723936,0.0000220992,0.001466683,0.00001492525],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.995441,0.001233709,0.001055806,0.0000779368,0.00001798364,0.00001876699,0.0005880653,0.00008068571,0.001486032],"genre_scores_gemma":[0.9935109,0.0003209203,0.001436472,0.00006354333,0.00001124691,0.00001997357,0.002076053,0.00003810752,0.00252265],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.002058746,"threshold_uncertainty_score":0.006887197,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.0155512483590118,"score_gpt":0.2696899920185818,"score_spread":0.25413874365957,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}