{"id":"W2026338038","doi":"10.1371/journal.pone.0069559","title":"Characterization of the Upper Respiratory Tract Microbiomes of Patients with Pandemic H1N1 Influenza","year":2013,"lang":"en","type":"article","venue":"PLoS ONE","topic":"Gut microbiota and health","field":"Biochemistry, Genetics and Molecular Biology","cited_by":78,"is_retracted":false,"has_abstract":true,"ca_institutions":"BC Centre for Disease Control; University of British Columbia; Agriculture and Agri-Food Canada; Women's Health Research Institute; University of Saskatchewan","funders":"Provincial Health Services Authority; Canadian Institutes of Health Research; British Columbia Centre for Disease Control; Genome British Columbia","keywords":"Microbiome; Biology; Firmicutes; Respiratory tract infections; Respiratory tract; Pneumonia; Metagenomics; Influenza-like illness; Influenza A virus; Immunology; Microbiology; Genetics; Respiratory system; Medicine; Internal medicine; Bacteria; Gene; 16S ribosomal RNA; Virus","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001961118,0.0001373186,0.0002305738,0.000350708,0.0002669274,0.0003064075,0.00007620444,0.000238562,0.000604478],"category_scores_gemma":[0.0009031261,0.0001252978,0.0001691647,0.0002189077,0.0001628139,0.000196291,0.0002644286,0.0001839353,0.0001683136],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001025816,"about_ca_system_score_gemma":0.0001198253,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001283251,"about_ca_topic_score_gemma":0.001320422,"domain_scores_codex":[0.9998197,0.00003581613,0.00002367823,0.00005451437,0.00002985338,0.00003648122],"domain_scores_gemma":[0.9998,0.00004677274,0.00005553199,0.00001459992,0.00004155656,0.00004148676],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.0005869303,0.00007150622,0.8914725,0.00005315685,0.00004455132,0.000382331,0.0008294527,0.0001492352,0.09715639,0.00003811266,0.0001870582,0.009028771],"study_design_scores_gemma":[0.000003674388,0.0002496649,0.9951462,0.000007784944,0.00001452561,0.0006556308,0.0005965788,0.0003955626,0.002569958,0.00002205053,0.0003343141,0.000004028823],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9995142,0.0000746912,0.000105975,0.0000142519,0.000002186363,0.000005327374,0.0001320174,0.000001432444,0.000150047],"genre_scores_gemma":[0.9989812,0.00008268932,0.0003908864,0.00004567278,0.000005248842,0.000008698866,0.0003426676,0.000002021512,0.0001408514],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.001283251,"threshold_uncertainty_score":0.002551496,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.0189829667213737,"score_gpt":0.2170702043128405,"score_spread":0.1980872375914668,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}