{"id":"W2026843747","doi":"10.1186/1471-2164-15-691","title":"The evolution of mitochondrial genomes in modern frogs (Neobatrachia): nonadaptive evolution of mitochondrial genome reorganization","year":2014,"lang":"en","type":"article","venue":"BMC Genomics","topic":"Genomics and Phylogenetic Studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":71,"is_retracted":false,"has_abstract":true,"ca_institutions":"Royal Ontario Museum","funders":"China Postdoctoral Science Foundation; West Light Foundation of the Chinese Academy of Sciences; Chinese Academy of Sciences; Natural Sciences and Engineering Research Council of Canada; National Natural Science Foundation of China","keywords":"Biology; Mitochondrial DNA; Genome; Evolutionary biology; Genome evolution; Genetics; Biological evolution; Computational biology; Gene","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002404041,0.0002144389,0.000293087,0.00008615941,0.0001483577,0.00001528866,0.0003553642,0.0002000143,0.000002196765],"category_scores_gemma":[0.0001853627,0.0001958113,0.0001363049,0.0001595571,0.000199321,0.000002767331,0.0001907505,0.0000924904,0.000002719163],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001986208,"about_ca_system_score_gemma":0.0004114292,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0003271569,"about_ca_topic_score_gemma":0.002231454,"domain_scores_codex":[0.9983882,0.0001515571,0.0005930821,0.0003989668,0.000171436,0.0002967535],"domain_scores_gemma":[0.9987661,0.00006611039,0.0003593676,0.0004973878,0.0002593802,0.00005163041],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0003795836,0.00006264046,0.009108018,0.00002286812,0.00006124116,8.93864e-8,0.0003455511,0.009379562,0.9779558,0.001977515,0.00003855234,0.0006685634],"study_design_scores_gemma":[0.01426417,0.003932728,0.36992,0.00009388213,0.0005518332,0.00003497155,0.007405218,0.03366481,0.4762262,0.05530678,0.03583829,0.002761061],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.927564,0.005538446,0.06537499,0.00003605761,0.0006375708,0.0004610961,0.00006909118,0.00000351503,0.0003152284],"genre_scores_gemma":[0.9906251,0.0003984132,0.008054769,0.000009608871,0.0006758516,0.00002258133,0.00005148596,0.00003615496,0.0001260394],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.5017296,"threshold_uncertainty_score":0.7984954,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.006748576178316648,"score_gpt":0.2011886741726812,"score_spread":0.1944400979943646,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}