{"id":"W2026880330","doi":"10.1002/prot.23048","title":"Tat peptide‐calmodulin binding studies and bioinformatics of HIV‐1 protein–calmodulin interactions","year":2011,"lang":"en","type":"article","venue":"Proteins Structure Function and Bioinformatics","topic":"RNA Research and Splicing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":10,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Manitoba","funders":"School of Medicine, Indiana University","keywords":"Calmodulin; Melittin; Calmodulin-binding proteins; Peptide; Biochemistry; Target peptide; Transactivation; Proteome; Plasma protein binding; Binding site; Biology; Binding protein; Calcium-binding protein; Chemistry; Transcription factor; Calcium; Gene; Enzyme","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002176582,0.0002384025,0.0002617399,0.00017634,0.0002125901,0.0000444248,0.0001080233,0.0001431469,0.00003627099],"category_scores_gemma":[0.0002094782,0.0001802829,0.00006307065,0.0001602025,0.0002406464,0.00006373387,0.0002001156,0.0002176482,0.000006144021],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00001736539,"about_ca_system_score_gemma":0.00004817446,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00001364079,"about_ca_topic_score_gemma":0.00003120294,"domain_scores_codex":[0.9987506,0.000035021,0.0005405924,0.0001785107,0.0002084982,0.0002867497],"domain_scores_gemma":[0.9990946,0.00001331727,0.0002778804,0.0002571797,0.0002091469,0.0001478833],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0009592746,0.0001023546,0.005773516,0.003225675,0.0006944973,0.000002899125,0.004248332,0.0000226921,0.9022496,0.001159381,0.001221951,0.08033984],"study_design_scores_gemma":[0.005177179,0.005325931,0.01026376,0.001120514,0.0002853357,0.0003946325,0.02491556,0.03185959,0.9061084,0.003212457,0.009537893,0.001798771],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9772059,0.0005241575,0.02048608,0.00007481672,0.0001351849,0.0008196774,0.00007249198,0.0000273177,0.0006543673],"genre_scores_gemma":[0.9087028,0.0003247717,0.08969378,0.00009024486,0.00009611752,0.00003945677,0.00009411115,0.00001962075,0.000939125],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.07854107,"threshold_uncertainty_score":0.7351723,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.02546558652921095,"score_gpt":0.2650618375425914,"score_spread":0.2395962510133804,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}