{"id":"W2027263004","doi":"10.1073/pnas.0812431106","title":"The porin OmpD from nontyphoidal <i>Salmonella</i> is a key target for a protective B1b cell antibody response","year":2009,"lang":"en","type":"article","venue":"Proceedings of the National Academy of Sciences","topic":"Salmonella and Campylobacter epidemiology","field":"Agricultural and Biological Sciences","cited_by":173,"is_retracted":false,"has_abstract":true,"ca_institutions":"Institute of Infection and Immunity","funders":"National Institute of Environmental Health Sciences; Biotechnology and Biological Sciences Research Council; Wellcome Trust","keywords":"Salmonella; Microbiology; Antigen; Biology; Porin; Bacterial outer membrane; Population; Bacteremia; Germinal center; Antibody; Immunology; Virology; B cell; Bacteria; Medicine; Escherichia coli; Gene; Genetics","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.002565246,0.0001386269,0.0002192774,0.00002239187,0.0005676036,0.00004252113,0.001104038,0.000137218,0.00001413181],"category_scores_gemma":[0.000732139,0.00004392889,0.0001712683,0.0005756046,0.000534509,0.0001996854,0.00009068416,0.000169022,0.000002299858],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00002498391,"about_ca_system_score_gemma":0.0000197525,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00004349105,"about_ca_topic_score_gemma":4.508583e-7,"domain_scores_codex":[0.9983044,0.00004142296,0.0003877271,0.0003708295,0.0006083424,0.0002872557],"domain_scores_gemma":[0.9978685,0.001256487,0.0005248146,0.000008099942,0.0002920846,0.00005003495],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.000417574,0.00005570272,0.004301466,0.000003551337,0.000008206155,6.511999e-9,0.0001432288,0.000003752157,0.990517,0.001118956,0.002079922,0.001350589],"study_design_scores_gemma":[0.0001808539,0.0005148735,0.3474585,0.00002794519,0.00001031124,0.000003117023,0.000347209,0.0002322838,0.4848163,0.1581186,0.008159286,0.0001307729],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9723329,0.0003512876,0.00000117047,0.02548243,0.00003584873,0.0004790689,0.00009342463,0.00001542635,0.001208454],"genre_scores_gemma":[0.9977,0.00004322286,0.000550577,0.001193559,0.0002430824,0.00002507763,9.396032e-7,7.429263e-7,0.0002427529],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.5057008,"threshold_uncertainty_score":0.4365605,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.03375636966409619,"score_gpt":0.2938294625409091,"score_spread":0.2600730928768129,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}