{"id":"W2027336285","doi":"10.1016/j.aquaculture.2009.07.027","title":"Development of single nucleotide polymorphism markers for Atlantic cod (Gadus morhua) using expressed sequences","year":2009,"lang":"en","type":"article","venue":"Aquaculture","topic":"Genetic diversity and population structure","field":"Biochemistry, Genetics and Molecular Biology","cited_by":30,"is_retracted":false,"has_abstract":false,"ca_institutions":"Dalhousie University","funders":"Genome Atlantic; Atlantic Canada Opportunities Agency","keywords":"Biology; Gadus; Atlantic cod; Single-nucleotide polymorphism; Genetics; SNP; SNP genotyping; Expressed sequence tag; Fishery; Evolutionary biology; Gene; Genome; Genotype; Fish <Actinopterygii>","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00005514115,0.0001248482,0.0001294397,0.00002290801,0.0001108466,0.00001648015,0.0001434879,0.0001470949,0.00001721366],"category_scores_gemma":[0.00001855291,0.0001108415,0.00007442559,0.00006037287,0.0000366825,0.000004693261,0.00002662079,0.00003593613,0.000001757943],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00001098048,"about_ca_system_score_gemma":0.0000497322,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.000009625011,"about_ca_topic_score_gemma":0.00001324139,"domain_scores_codex":[0.999319,0.00001692445,0.0001738833,0.0002114508,0.0001167633,0.0001619415],"domain_scores_gemma":[0.9996141,0.000004047314,0.000112116,0.0001372912,0.00008004721,0.00005237481],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.00009955619,0.00002688463,0.0006533123,0.00001606783,0.00003876834,9.221199e-7,0.000341012,0.0001347506,0.9958801,0.00004185685,0.001439256,0.001327535],"study_design_scores_gemma":[0.0009365046,0.0002138438,0.01019661,0.00004832447,0.00006744466,0.00001416407,0.0006848042,0.00007439429,0.8903156,0.0002644692,0.09683175,0.0003520925],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9973702,0.0002026827,0.001772396,0.0001134144,0.00009804375,0.0001751055,0.00003244147,0.00000854741,0.0002271789],"genre_scores_gemma":[0.9616984,0.000008828449,0.03747329,0.0001788462,0.0000858887,0.000001449743,0.0002741712,0.000006400526,0.0002727162],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.1055645,"threshold_uncertainty_score":0.4519987,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.02720851780198289,"score_gpt":0.2534141028263358,"score_spread":0.2262055850243529,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}