{"id":"W2027485436","doi":"10.1016/j.ijid.2012.12.015","title":"Genetic analysis of Bordetella pertussis in Ontario, Canada reveals one predominant clone","year":2013,"lang":"en","type":"article","venue":"International Journal of Infectious Diseases","topic":"Bacterial Infections and Vaccines","field":"Immunology and Microbiology","cited_by":30,"is_retracted":false,"has_abstract":true,"ca_institutions":"Public Health Ontario; University of Toronto; Canadian Science Centre for Human and Animal Health","funders":"Rijksinstituut voor Volksgezondheid en Milieu; Public Health Agency of Canada","keywords":"Bordetella pertussis; Pulsed-field gel electrophoresis; Pertactin; Genotype; Biology; Virulence; clone (Java method); Pertussis toxin; Microbiology; Serotype; Virology; Whooping cough; Genetics; Gene; Bacteria; Vaccination; G protein","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":true,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001699139,0.0003343392,0.0002323436,0.001362448,0.002172062,0.0008054505,0.0004815281,0.0002865963,0.00113045],"category_scores_gemma":[0.0008579592,0.0002483307,0.0002155915,0.002229459,0.0003786951,0.0001845467,0.0003461868,0.0002646698,0.0002335648],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.01201319,"about_ca_system_score_gemma":0.01513763,"about_ca_topic_candidate":true,"about_ca_topic_consensus":true,"about_ca_topic_score_codex":0.980258,"about_ca_topic_score_gemma":0.9859526,"domain_scores_codex":[0.9994966,0.00001327498,0.00001912636,0.00007470734,0.0002627775,0.0001334972],"domain_scores_gemma":[0.9993278,0.00002953246,0.0001114043,0.0000163788,0.0004048016,0.0001101833],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.0005237252,0.00007989782,0.8798994,0.0002549465,0.0000539408,0.001239881,0.003715731,0.0005990237,0.07614291,0.0002408519,0.001419259,0.03583043],"study_design_scores_gemma":[0.00001118847,0.00005910647,0.9915348,0.00003102987,0.00002379206,0.0004137685,0.001301848,0.000345749,0.002135829,0.00001758944,0.004116677,0.000008586119],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9946765,0.0007014796,0.0002770087,0.0001224018,0.000004507053,0.00006690818,0.001479338,0.00001331323,0.002658616],"genre_scores_gemma":[0.9936846,0.0008850824,0.0008094102,0.00009118717,0.000003649686,0.00002517147,0.001981193,0.000007945278,0.002511714],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.01974195,"threshold_uncertainty_score":0.08716226,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.006022688256197306,"score_gpt":0.2194417374013175,"score_spread":0.2134190491451202,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}