{"id":"W2027642861","doi":"10.1016/j.meegid.2013.06.019","title":"Phylogenetic analysis of small ruminant lentiviruses in mixed flocks: Multiple evidence of dual infection and natural transmission of types A2 and B1 between sheep and goats","year":2013,"lang":"en","type":"article","venue":"Infection Genetics and Evolution","topic":"HIV Research and Treatment","field":"Immunology and Microbiology","cited_by":28,"is_retracted":false,"has_abstract":false,"ca_institutions":"Ministère de l'Agriculture, des Pêcheries et de l'Alimentation; Canadian Food Inspection Agency","funders":"Canadian Food Inspection Agency","keywords":"Flock; Herd; Biology; Phylogenetic tree; Lentivirus; Transmission (telecommunications); Ruminant; Dual purpose; Population; Virology; Veterinary medicine; Zoology; Genetics; Human immunodeficiency virus (HIV); Animal science; Gene; Ecology; Viral disease; Pasture; Demography","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0007595221,0.0003658836,0.0003766908,0.002253764,0.001160317,0.00087079,0.0004764995,0.0005471313,0.001228979],"category_scores_gemma":[0.001148999,0.0002755609,0.0003219721,0.0007338253,0.0006290496,0.0002831511,0.0005837437,0.0004969944,0.0002591684],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0004018741,"about_ca_system_score_gemma":0.0002399585,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.002760175,"about_ca_topic_score_gemma":0.003623353,"domain_scores_codex":[0.9993906,0.0001682711,0.00005156244,0.0001792814,0.00007592367,0.0001344084],"domain_scores_gemma":[0.9986153,0.0004812838,0.0003339111,0.00009322871,0.0001968488,0.0002794445],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.002269742,0.0002428096,0.7335326,0.00009829106,0.0003526483,0.0007681177,0.002782463,0.0003702823,0.2522679,0.0004583629,0.0001077403,0.006749087],"study_design_scores_gemma":[0.00002513322,0.0003538018,0.9894314,0.00003071845,0.000119688,0.001842163,0.002066419,0.001430095,0.004090598,0.0001114932,0.0004854114,0.00001307636],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.999509,0.00007245733,0.0001386411,0.000005167116,0.000001751631,0.00000483114,0.00005213946,0.00000124088,0.0002148093],"genre_scores_gemma":[0.9994676,0.00003325798,0.0002550859,0.00001474656,0.00000276351,0.00000510541,0.0001368097,0.000002731208,0.0000819947],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.002760175,"threshold_uncertainty_score":0.005488217,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.02138603704749226,"score_gpt":0.2618798031835896,"score_spread":0.2404937661360974,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}