{"id":"W2027642861","doi":"10.1016/j.meegid.2013.06.019","title":"Phylogenetic analysis of small ruminant lentiviruses in mixed flocks: Multiple evidence of dual infection and natural transmission of types A2 and B1 between sheep and goats","year":2013,"lang":"en","type":"article","venue":"Infection Genetics and Evolution","topic":"HIV Research and Treatment","field":"Immunology and Microbiology","cited_by":28,"is_retracted":false,"has_abstract":false,"ca_institutions":"Ministère de l'Agriculture, des Pêcheries et de l'Alimentation; Canadian Food Inspection Agency","funders":"Canadian Food Inspection Agency","keywords":"Flock; Herd; Biology; Phylogenetic tree; Lentivirus; Transmission (telecommunications); Ruminant; Dual purpose; Population; Virology; Veterinary medicine; Zoology; Genetics; Human immunodeficiency virus (HIV); Animal science; Gene; Ecology; Viral disease; Pasture; Demography","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001508028,0.00009669564,0.0002574705,0.0003350493,0.00005770432,0.000006685832,0.00001533946,0.000116178,0.00001015075],"category_scores_gemma":[0.00004942384,0.00008116337,0.00003476949,0.0002316994,0.0002108676,0.00005901808,0.00003620201,0.00007730676,9.573167e-7],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00001731479,"about_ca_system_score_gemma":0.00001725652,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.004563442,"about_ca_topic_score_gemma":0.001685328,"domain_scores_codex":[0.9992679,0.0001352106,0.0002539708,0.0001809291,0.00003629871,0.0001257331],"domain_scores_gemma":[0.9995605,0.0001434833,0.0001036189,0.00007415026,0.00009266141,0.0000256141],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.00004601533,0.00004941243,0.6916016,0.00007999779,0.0001934563,1.072154e-7,0.0001401263,0.00005431651,0.2761044,0.000003229975,0.000001696321,0.03172566],"study_design_scores_gemma":[0.000678553,0.0004898843,0.9427688,0.0000848048,0.0002778514,0.000004163468,0.00002545832,0.001107869,0.05442895,0.00004605718,0.00002296198,0.00006466691],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9820049,0.01709838,0.0005930576,0.00001480884,0.00004104656,0.0002222885,0.00001785119,0.000004463787,0.000003248227],"genre_scores_gemma":[0.992991,0.006857346,0.00009504386,7.944211e-7,0.000005326682,0.00001089248,0.00002312719,0.000003823009,0.00001260787],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.2511672,"threshold_uncertainty_score":0.6898589,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.02138603704749226,"score_gpt":0.2618798031835896,"score_spread":0.2404937661360974,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}