{"id":"W2027772389","doi":"10.1128/jcm.01768-09","title":"Regional Profiling for Determination of Genotype Diversity of Mastitis-Specific <i>Staphylococcus aureus</i> Lineage in Canada by Use of Clumping Factor A, Pulsed-Field Gel Electrophoresis, and <i>spa</i> Typing","year":2009,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Antimicrobial Resistance in Staphylococcus","field":"Medicine","cited_by":33,"is_retracted":false,"has_abstract":true,"ca_institutions":"Université de Montréal; Public Health Agency of Canada; Health Canada; Institut National de Santé Publique du Québec; McGill University","funders":"Agriculture and Agri-Food Canada; Novalait; Natural Sciences and Engineering Research Council of Canada; National Natural Science Foundation of China; Public Health Agency of Canada; Dairy Farmers of Canada","keywords":"Genotype; Typing; Biology; Pulsed-field gel electrophoresis; Mastitis; Staphylococcus aureus; Microbiology; DNA profiling; Gel electrophoresis; Genetics; Bacteria; Gene; DNA","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":true,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002703657,0.0002893407,0.0002582742,0.001665753,0.0009808528,0.0007382164,0.0003718761,0.000227506,0.0004865995],"category_scores_gemma":[0.0007821721,0.0002047334,0.00028315,0.001825047,0.0002830995,0.0001464715,0.0003704842,0.0002566445,0.0001492429],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.003970065,"about_ca_system_score_gemma":0.005935319,"about_ca_topic_candidate":true,"about_ca_topic_consensus":true,"about_ca_topic_score_codex":0.8759882,"about_ca_topic_score_gemma":0.9132276,"domain_scores_codex":[0.9995819,0.00002956703,0.00002004581,0.00009340738,0.0001659037,0.0001093054],"domain_scores_gemma":[0.9994216,0.00003733319,0.00008988794,0.00001882905,0.0003492346,0.00008324462],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.0004027424,0.0000692301,0.7989018,0.00009839675,0.00008366191,0.0003564911,0.001270291,0.00110993,0.1641128,0.0001929203,0.0004455067,0.03295622],"study_design_scores_gemma":[0.000005656039,0.0001019505,0.9866112,0.00001788232,0.00003638668,0.0002695227,0.0009588739,0.001753046,0.008425025,0.00002464644,0.001780802,0.00001492237],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9963618,0.0003548284,0.001354891,0.00003339724,0.00000289159,0.00005155793,0.000678851,0.00002375253,0.001137957],"genre_scores_gemma":[0.9914886,0.0002933254,0.006217305,0.0000428885,0.000001809543,0.00002404923,0.001099418,0.00001032609,0.0008224225],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.1240118,"threshold_uncertainty_score":0.2494841,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.04647906636583427,"score_gpt":0.3113300602232125,"score_spread":0.2648509938573782,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}