{"id":"W2027772389","doi":"10.1128/jcm.01768-09","title":"Regional Profiling for Determination of Genotype Diversity of Mastitis-Specific <i>Staphylococcus aureus</i> Lineage in Canada by Use of Clumping Factor A, Pulsed-Field Gel Electrophoresis, and <i>spa</i> Typing","year":2009,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Antimicrobial Resistance in Staphylococcus","field":"Medicine","cited_by":33,"is_retracted":false,"has_abstract":true,"ca_institutions":"Université de Montréal; Public Health Agency of Canada; Health Canada; Institut National de Santé Publique du Québec; McGill University","funders":"Agriculture and Agri-Food Canada; Novalait; Natural Sciences and Engineering Research Council of Canada; National Natural Science Foundation of China; Public Health Agency of Canada; Dairy Farmers of Canada","keywords":"Genotype; Typing; Biology; Pulsed-field gel electrophoresis; Mastitis; Staphylococcus aureus; Microbiology; DNA profiling; Gel electrophoresis; Genetics; Bacteria; Gene; DNA","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":true,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0005376984,0.0001611462,0.001084223,0.0001603237,0.00003984111,0.000003860545,0.0001783913,0.0002553421,0.000009458658],"category_scores_gemma":[0.001016056,0.0001448595,0.0002359124,0.0001593833,0.0001739628,0.00008516247,0.00006097495,0.0004635107,7.31232e-8],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001293205,"about_ca_system_score_gemma":0.0007673893,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.004167246,"about_ca_topic_score_gemma":0.01065877,"domain_scores_codex":[0.9974449,0.0001283269,0.001823246,0.0002268487,0.0001072543,0.000269465],"domain_scores_gemma":[0.9959612,0.001533493,0.001630654,0.0001590422,0.000613825,0.0001018264],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.00352563,0.0001697323,0.1337014,0.0001403474,0.00005635775,0.00001523654,0.00003662497,0.000007373147,0.8553109,0.00001685988,0.002503878,0.004515726],"study_design_scores_gemma":[0.006632116,0.004444816,0.1501885,0.001125327,0.0002069645,0.00008224581,0.0001232912,0.000115459,0.8269349,0.0001115272,0.00969568,0.0003391749],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9944654,0.001564564,0.002867013,0.0004135545,0.0001835322,0.0003376526,0.0001585534,0.000002137182,0.000007625402],"genre_scores_gemma":[0.9906999,0.001655144,0.006908531,0.0005900624,0.000104296,6.034971e-7,0.00001787124,0.00001073463,0.0000127904],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.02837596,"threshold_uncertainty_score":0.6299657,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.04647906636583427,"score_gpt":0.3113300602232125,"score_spread":0.2648509938573782,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}