{"id":"W2028079766","doi":"10.1007/s10969-013-9159-5","title":"Solution NMR structures provide first structural coverage of the large protein domain family PF08369 and complementary structural coverage of dark operative protochlorophyllide oxidoreductase complexes","year":2013,"lang":"en","type":"article","venue":"Journal of Structural and Functional Genomics","topic":"Photosynthetic Processes and Mechanisms","field":"Biochemistry, Genetics and Molecular Biology","cited_by":0,"is_retracted":false,"has_abstract":false,"ca_institutions":"Structural Genomics Consortium","funders":"National Institute of General Medical Sciences; National Institutes of Health","keywords":"Protochlorophyllide; Structural genomics; Oxidoreductase; Structural biology; Domain (mathematical analysis); Chemistry; Protein structure; Crystallography; Biochemistry; Enzyme","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001414272,0.0002940806,0.0004006684,0.00005929481,0.0003343987,0.0000585936,0.0002317464,0.0001125848,0.00006204452],"category_scores_gemma":[0.00004096016,0.0001873099,0.0001479021,0.00007643852,0.0002977138,0.00006146888,0.0002608038,0.0002263969,1.466217e-7],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00004697247,"about_ca_system_score_gemma":0.0001812156,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0001240735,"about_ca_topic_score_gemma":0.00004747539,"domain_scores_codex":[0.9983686,0.00007547082,0.0006837187,0.0002767286,0.0003262122,0.0002692197],"domain_scores_gemma":[0.99857,0.00002259334,0.0007363417,0.000190339,0.0003596294,0.0001211465],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0007365247,0.00001291286,0.001401999,0.0001502736,0.0001779064,0.000001515201,0.0002379796,0.0003858607,0.9941984,0.001614265,0.00006821498,0.00101418],"study_design_scores_gemma":[0.00436429,0.001602423,0.1496244,0.0001223644,0.0001229782,0.0007672248,0.001172574,0.0007890448,0.7697638,0.06975582,0.001382334,0.0005327185],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9962975,0.0005190126,0.0009041908,0.0001904142,0.0002484079,0.001246904,0.0005653932,0.000002635495,0.00002547355],"genre_scores_gemma":[0.9971233,0.00007511825,0.002261569,0.0001501977,0.0002393178,0.00002358377,0.00008283277,0.00001894032,0.00002513043],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.2244345,"threshold_uncertainty_score":0.7638277,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.007981530459450707,"score_gpt":0.2199755682864467,"score_spread":0.2119940378269959,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}