{"id":"W2028131660","doi":"10.1021/pr0704027","title":"Local and Nonlocal Environments around Cis Peptides","year":2007,"lang":"en","type":"article","venue":"Journal of Proteome Research","topic":"Monoclonal and Polyclonal Antibodies Research","field":"Medicine","cited_by":15,"is_retracted":false,"has_abstract":true,"ca_institutions":"Queen's University","funders":"","keywords":"Chemistry; Biophysics; Computational biology; Biology","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00578516,0.0001293879,0.0003474792,0.0005892732,0.0001898904,0.00004716118,0.0001925907,0.0001221615,0.0001934174],"category_scores_gemma":[0.0003041796,0.00008904077,0.0001218023,0.0003225022,0.0008102302,0.0001508472,0.0001899736,0.001433688,0.00009783753],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0002040932,"about_ca_system_score_gemma":0.0002278302,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00007477193,"about_ca_topic_score_gemma":0.000009269927,"domain_scores_codex":[0.9963133,0.0001490632,0.0005154012,0.000189125,0.002145502,0.0006876174],"domain_scores_gemma":[0.9983395,0.0004142679,0.00009934595,0.0001667291,0.0002987855,0.0006814108],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.01646201,0.001539042,0.07597171,0.0009166028,0.0006301925,0.009748113,0.0008961703,0.00001101472,0.5721804,0.000901186,0.005649101,0.3150945],"study_design_scores_gemma":[0.008823979,0.01999032,0.3703062,0.001456013,0.0001089851,0.01601171,0.005315353,0.002415178,0.2315715,0.004205341,0.3391384,0.0006570472],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9784427,0.001780729,0.01223498,0.003402953,0.00005760062,0.0004780727,0.00000309132,0.000004391661,0.003595438],"genre_scores_gemma":[0.9885982,0.0008677875,0.003575016,0.00008035393,0.0005317861,0.000004375568,0.000001544919,0.0000205298,0.006320461],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.3406089,"threshold_uncertainty_score":0.6228739,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.07800650989219818,"score_gpt":0.4156002859257057,"score_spread":0.3375937760335075,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}