{"id":"W2028370061","doi":"10.1186/1471-2164-13-327","title":"Comparative metagenomics of three Dehalococcoides-containing enrichment cultures: the role of the non-dechlorinating community","year":2012,"lang":"en","type":"article","venue":"BMC Genomics","topic":"Microbial bioremediation and biosurfactants","field":"Environmental Science","cited_by":114,"is_retracted":false,"has_abstract":true,"ca_institutions":"Dalhousie University; University of Toronto","funders":"Strategic Environmental Research and Development Program; Genome Atlantic; University of Toronto; Dalhousie University; Ontario Genomics; Canada Research Chairs; Ontario Genomics Institute; Government of Canada; Genome Canada; Joint Genome Institute; U.S. Department of Energy; U.S. Department of Defense","keywords":"Metagenomics; Dehalococcoides; Biology; Firmicutes; Archaea; Proteobacteria; Clostridia; Microbiology; Computational biology; Bacteria; Genetics; Gene; 16S ribosomal RNA","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0004469201,0.0008329219,0.0005897279,0.001174164,0.0004154219,0.0006326344,0.0003216668,0.0004050168,0.0003725581],"category_scores_gemma":[0.0006437016,0.0002053201,0.0006593211,0.001169272,0.0001827248,0.0002727601,0.0007306283,0.0004248556,0.0001690166],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0003251747,"about_ca_system_score_gemma":0.0005441194,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.002959026,"about_ca_topic_score_gemma":0.002697377,"domain_scores_codex":[0.9995679,0.00004565884,0.00005392655,0.0001204626,0.000138253,0.0000737651],"domain_scores_gemma":[0.9997163,0.00005288052,0.00004562052,0.00002376398,0.00008975364,0.00007166198],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.000200845,0.00004376083,0.003602204,0.00005666162,0.00002410702,0.0000455377,0.00009583289,0.0001037947,0.9938378,0.00001584126,0.0000104404,0.00196332],"study_design_scores_gemma":[0.00008152245,0.001316554,0.2225756,0.00005810914,0.0004495016,0.0009726102,0.0008331597,0.003364137,0.7672026,0.0001835207,0.002912814,0.00004987679],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9939287,0.0006265735,0.002303023,0.0000426269,0.00001067642,0.0001047959,0.002449631,0.00004485254,0.000489061],"genre_scores_gemma":[0.9739227,0.0008271775,0.01517828,0.00008936073,0.00001366833,0.0001854961,0.009084474,0.00003852318,0.0006602278],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.002959026,"threshold_uncertainty_score":0.005883574,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.03744850513001487,"score_gpt":0.2586130949666854,"score_spread":0.2211645898366706,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}