{"id":"W2028387543","doi":"10.1371/journal.pone.0009109","title":"Shewanella spp. Genomic Evolution for a Cold Marine Lifestyle and In-Situ Explosive Biodegradation","year":2010,"lang":"en","type":"article","venue":"PLoS ONE","topic":"Microbial Community Ecology and Physiology","field":"Environmental Science","cited_by":65,"is_retracted":false,"has_abstract":true,"ca_institutions":"National Research Council Canada; Biotechnology Research Institute","funders":"Lawrence Berkeley National Laboratory; Lawrence Livermore National Laboratory; Los Alamos National Laboratory; Biological and Environmental Research; Office of Naval Research; Strategic Environmental Research and Development Program; Office of Science; McGill University; U.S. Department of Energy","keywords":"Shewanella; Psychrophile; Proteobacteria; Biology; Genome; Microbiology; Shewanella putrefaciens; Bacteria; Genetics; Gene; 16S ribosomal RNA","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001371251,0.00006662514,0.000111033,0.00002734648,0.0001037264,0.000006303198,0.0001043429,0.0000927607,0.00069039],"category_scores_gemma":[0.00004122689,0.00007126694,0.00001314267,0.00005680606,0.0001217914,0.00007995841,0.0001685748,0.0001760818,0.000146815],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0000494031,"about_ca_system_score_gemma":0.00000778995,"about_ca_topic_candidate":true,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0001950146,"about_ca_topic_score_gemma":0.01874135,"domain_scores_codex":[0.9995303,0.00004645935,0.0001009776,0.0001437933,0.00003595722,0.0001425152],"domain_scores_gemma":[0.999673,0.00009405221,0.00004166456,0.000149325,0.000006262304,0.00003567035],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.00004402785,0.0003322617,0.05933204,0.000009764221,0.000009022808,4.192928e-7,0.00009827806,0.000004236795,0.9396843,0.0002031539,0.0001698531,0.0001126683],"study_design_scores_gemma":[0.001106452,0.000317065,0.6983719,0.00001343815,0.00004295808,0.000004722474,0.00006081653,0.0009077342,0.2911654,0.006619327,0.001120651,0.0002695105],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9984306,0.000008663088,0.00002433244,0.0002326304,0.00003506196,0.000338046,0.000006606207,0.00001321266,0.0009109087],"genre_scores_gemma":[0.9974624,0.00002712986,0.002001485,0.0001456096,0.00003207028,0.00004202471,0.00004551218,0.000006303853,0.0002374466],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.6485189,"threshold_uncertainty_score":0.999164,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01957516214949237,"score_gpt":0.2010589360144907,"score_spread":0.1814837738649983,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}