{"id":"W2028387543","doi":"10.1371/journal.pone.0009109","title":"Shewanella spp. Genomic Evolution for a Cold Marine Lifestyle and In-Situ Explosive Biodegradation","year":2010,"lang":"en","type":"article","venue":"PLoS ONE","topic":"Microbial Community Ecology and Physiology","field":"Environmental Science","cited_by":65,"is_retracted":false,"has_abstract":true,"ca_institutions":"National Research Council Canada; Biotechnology Research Institute","funders":"Lawrence Berkeley National Laboratory; Lawrence Livermore National Laboratory; Los Alamos National Laboratory; Biological and Environmental Research; Office of Naval Research; Strategic Environmental Research and Development Program; Office of Science; McGill University; U.S. Department of Energy","keywords":"Shewanella; Psychrophile; Proteobacteria; Biology; Genome; Microbiology; Shewanella putrefaciens; Bacteria; Genetics; Gene; 16S ribosomal RNA","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001084508,0.0004113778,0.0002199232,0.0007839724,0.0003673667,0.000606536,0.0002035742,0.0003555244,0.002100018],"category_scores_gemma":[0.0004160122,0.0002012506,0.0003694131,0.0009603438,0.000189057,0.0002771523,0.0006934548,0.0003749554,0.00048869],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0002383773,"about_ca_system_score_gemma":0.0004357153,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.004645855,"about_ca_topic_score_gemma":0.004351518,"domain_scores_codex":[0.9998509,0.00001123516,0.00001259203,0.00005038417,0.00003510646,0.00003974951],"domain_scores_gemma":[0.9996279,0.00005074299,0.0001055691,0.00004313181,0.000106037,0.0000664659],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0004207089,0.0001011725,0.08135112,0.0001545049,0.00008238506,0.0004683754,0.0005787847,0.0002172813,0.9021271,0.0001929021,0.0002389561,0.01406666],"study_design_scores_gemma":[0.00002107593,0.0002571144,0.9404716,0.00002796106,0.0001167012,0.001838982,0.001361993,0.0006341097,0.04937844,0.0002900986,0.005567809,0.00003414312],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9971418,0.0001599109,0.0003130661,0.00005678925,0.000006147521,0.000009557349,0.001070909,0.00002416952,0.00121757],"genre_scores_gemma":[0.992785,0.0002115409,0.0008867788,0.00006469391,0.000005430275,0.00002793482,0.003308375,0.000014077,0.002696176],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.004645855,"threshold_uncertainty_score":0.009237647,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01957516214949237,"score_gpt":0.2010589360144907,"score_spread":0.1814837738649983,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}