{"id":"W2028459965","doi":"10.1073/pnas.1409945111","title":"Activation of transcription and retrotransposition of a novel retroelement, <i>Steamer</i> , in neoplastic hemocytes of the mollusk <i>Mya arenaria</i>","year":2014,"lang":"en","type":"article","venue":"Proceedings of the National Academy of Sciences","topic":"Cancer Genomics and Diagnostics","field":"Biochemistry, Genetics and Molecular Biology","cited_by":66,"is_retracted":false,"has_abstract":true,"ca_institutions":"Environment and Climate Change Canada","funders":"National Cancer Institute; National Institutes of Health; Howard Hughes Medical Institute","keywords":"Retrotransposon; Biology; Hemolymph; Reverse transcriptase; Alu element; Transcription (linguistics); DNA; Genome; RNA; Gene; Long terminal repeat; Endogenous retrovirus; Genetics; Cell biology; Molecular biology; Virology; Human genome; Transposable element","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0004754234,0.00005693454,0.0001161851,0.00005856848,0.00003405953,0.000003241602,0.0002273042,0.00006446854,7.598471e-7],"category_scores_gemma":[0.0002784171,0.00003965399,0.00005050118,0.0002586158,0.0003956256,0.00001699321,0.0000390955,0.00005320522,6.460803e-9],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00001019835,"about_ca_system_score_gemma":0.0000298348,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00002714578,"about_ca_topic_score_gemma":0.000001424295,"domain_scores_codex":[0.9991751,0.000005973323,0.0002986932,0.0001290025,0.0003270081,0.00006425742],"domain_scores_gemma":[0.9993269,0.00004754391,0.0004330491,0.00001236978,0.0001693369,0.00001077454],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.00006387606,0.00004953984,0.01020905,0.0001079383,0.000007474922,1.522407e-10,0.00008787849,0.0004171497,0.9838221,0.0049792,0.00002624785,0.0002295288],"study_design_scores_gemma":[0.0004242208,0.0001452589,0.04536701,0.000143067,0.00001396898,9.046528e-7,0.00006490748,0.0008825209,0.9509636,0.001911044,0.0000468527,0.00003663098],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9987344,0.00009063246,0.0000795697,0.000516979,0.0000142358,0.0001316541,0.00004416315,5.873821e-7,0.0003878415],"genre_scores_gemma":[0.9992482,0.0001109953,0.0005348723,0.00006891068,0.0000244341,0.000003964647,8.247706e-7,0.000002472855,0.00000528937],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.03515796,"threshold_uncertainty_score":0.1617043,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01695654380636592,"score_gpt":0.2493390744644164,"score_spread":0.2323825306580505,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}