{"id":"W2028622163","doi":"10.1110/ps.03108103","title":"Solution structure of <i>Vibrio cholerae</i> protein VC0424: A variation of the ferredoxin‐like fold","year":2003,"lang":"en","type":"article","venue":"Protein Science","topic":"Protein Structure and Dynamics","field":"Biochemistry, Genetics and Molecular Biology","cited_by":11,"is_retracted":false,"has_abstract":true,"ca_institutions":"Structural Genomics Consortium","funders":"Pacific Northwest National Laboratory; Biological and Environmental Research; National Institute of General Medical Sciences; Battelle; U.S. Department of Energy; National Institutes of Health; National Science Foundation","keywords":"Ferredoxin; Antiparallel (mathematics); Vibrio cholerae; Protein secondary structure; Vibrio; Protein structure; Conserved sequence; Sulfolobus; Biology; Crystallography; Chemistry; Peptide sequence; Biochemistry; Archaea; Genetics; Physics; Bacteria; Gene; Enzyme","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0004069018,0.0001441435,0.0001428304,0.00005123924,0.0001653813,0.00002362429,0.000540778,0.0001323768,0.0000101522],"category_scores_gemma":[0.0003680028,0.0001053095,0.00007971642,0.0005408936,0.0004935254,0.00002031053,0.0001575369,0.0001142953,5.758685e-7],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00002658158,"about_ca_system_score_gemma":0.0004186644,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00004239159,"about_ca_topic_score_gemma":0.0000306044,"domain_scores_codex":[0.9985428,0.00008421191,0.000280829,0.0003790636,0.0004458575,0.0002672808],"domain_scores_gemma":[0.9987789,0.000003373276,0.0002992824,0.0006213874,0.0002423593,0.00005463022],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.00002158186,0.00001936072,0.0002900927,0.00002989159,0.000006418731,9.914831e-8,0.00006696526,0.00009147914,0.9947546,0.004164532,0.000006819222,0.0005482071],"study_design_scores_gemma":[0.0002789916,0.000117806,0.003537434,0.00003781292,0.000007544182,0.000008664086,0.00001154202,0.0001811789,0.9901085,0.004881699,0.0007024021,0.0001264574],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.983759,0.0002302288,0.01399549,0.00007366208,0.0001623458,0.001040551,0.00002604431,0.000007209636,0.000705486],"genre_scores_gemma":[0.9917834,0.000002945988,0.007788158,0.00006354606,0.00003604344,0.0000281822,0.000004594264,0.00001000085,0.0002830724],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.008024478,"threshold_uncertainty_score":0.4294396,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.005431117914822547,"score_gpt":0.2188562778488239,"score_spread":0.2134251599340014,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}