{"id":"W2028824646","doi":"10.1128/jb.187.13.4497-4504.2005","title":"Phenylacetate Catabolism in <i>Rhodococcus</i> sp. Strain RHA1: a Central Pathway for Degradation of Aromatic Compounds","year":2005,"lang":"en","type":"article","venue":"Journal of Bacteriology","topic":"Microbial Metabolic Engineering and Bioproduction","field":"Biochemistry, Genetics and Molecular Biology","cited_by":106,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of British Columbia","funders":"","keywords":"Phenylacetate; Biology; Biochemistry; Bacteria; Catabolism; Rhodococcus; Transposon mutagenesis; Operon; Phenylacetaldehyde; Coenzyme A; Enzyme; Gene; Escherichia coli; Genetics; Mutant; Transposable element","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001633845,0.0008181725,0.0006599919,0.000316246,0.0001926284,0.0005972062,0.0003111674,0.0003378775,0.0003153085],"category_scores_gemma":[0.0002345163,0.0002355732,0.0004560222,0.0002943223,0.0001850942,0.0002634902,0.0003647997,0.000592743,0.000561562],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0004518911,"about_ca_system_score_gemma":0.0004347426,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.004826569,"about_ca_topic_score_gemma":0.003206402,"domain_scores_codex":[0.9996958,0.0000369464,0.00004048668,0.00008659808,0.00007810505,0.00006217619],"domain_scores_gemma":[0.9998166,0.00002669493,0.00005757056,0.00002383021,0.00003884156,0.0000365288],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.00005682378,0.00002181474,0.0003764393,0.00003756105,0.000005196009,0.00004886007,0.0000202,0.00003153744,0.9985876,0.00001308702,0.00001825795,0.0007826369],"study_design_scores_gemma":[0.00001764461,0.0002330151,0.02091947,0.0000165872,0.00004181223,0.0009197458,0.0001414276,0.001330986,0.9749954,0.00002759337,0.001334831,0.00002147063],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9964353,0.0009772732,0.0007467162,0.0001150517,0.00001242575,0.00003059783,0.001056715,0.00005815686,0.0005677768],"genre_scores_gemma":[0.9884593,0.0007689231,0.004709511,0.00008441751,0.00001267353,0.00004761014,0.004068701,0.00007053548,0.001778232],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.004826569,"threshold_uncertainty_score":0.009596944,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.009072733349543565,"score_gpt":0.2291768056876322,"score_spread":0.2201040723380887,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}