{"id":"W2028847033","doi":"10.1128/jb.06417-11","title":"EspD Is Critical for the Virulence-Mediating ESX-1 Secretion System in Mycobacterium tuberculosis","year":2011,"lang":"en","type":"article","venue":"Journal of Bacteriology","topic":"Tuberculosis Research and Epidemiology","field":"Medicine","cited_by":85,"is_retracted":false,"has_abstract":true,"ca_institutions":"","funders":"European Maritime and Fisheries Fund; National Institute of Allergy and Infectious Diseases; Canadian Institutes of Health Research; Schweizerischer Nationalfonds zur Förderung der Wissenschaftlichen Forschung","keywords":"Secretion; Biology; Mycobacterium tuberculosis; Type three secretion system; Mutagenesis; Microbiology; Cell biology; Virulence; Tuberculosis; Mutation; Genetics; Gene; Biochemistry","routes":{"ca_aff":false,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":true},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.002101485,0.0001558657,0.0006954675,0.000240114,0.00008115826,0.00001161747,0.0002050426,0.0002594811,0.0002109764],"category_scores_gemma":[0.003156953,0.00009444966,0.0002722286,0.0001394878,0.0002234857,0.0001499955,0.0000551677,0.0005869523,0.00002243038],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001760806,"about_ca_system_score_gemma":0.0001544526,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0001183909,"about_ca_topic_score_gemma":0.00001469321,"domain_scores_codex":[0.9977899,0.0003820339,0.0009526236,0.0001963854,0.0001644042,0.0005146596],"domain_scores_gemma":[0.9971685,0.001733969,0.0002805206,0.000227741,0.0003671104,0.0002221316],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.009918729,0.000650617,0.659665,0.001756808,0.001058152,0.000577622,0.005389034,0.000008343432,0.2864057,0.005653616,0.007005407,0.02191087],"study_design_scores_gemma":[0.002308525,0.004062709,0.9754708,0.000463234,0.0002822248,0.003451094,0.002151479,0.003291317,0.002361002,0.0004232649,0.005536622,0.0001977412],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9879063,0.0006399464,0.001473553,0.008350526,0.0008228217,0.0003146849,0.00002050889,0.00001279743,0.0004588175],"genre_scores_gemma":[0.9948218,0.0004909199,0.002168601,0.001580939,0.0008595625,0.00003706548,0.000006315605,0.00001867634,0.00001607202],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.3158057,"threshold_uncertainty_score":0.3851545,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.05067221166369788,"score_gpt":0.3362656593224954,"score_spread":0.2855934476587975,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}