{"id":"W2028958150","doi":"10.1139/gen-2012-0081","title":"FISH using a <i>gag</i>-like fragment probe reveals a common <i>Ty</i>3-<i>gypsy</i>-like retrotransposon in genome of <i>Coffea</i> species","year":2012,"lang":"en","type":"article","venue":"Genome","topic":"Chromosomal and Genetic Variations","field":"Agricultural and Biological Sciences","cited_by":16,"is_retracted":false,"has_abstract":true,"ca_institutions":"","funders":"Fundação Araucária","keywords":"Coffea arabica; Coffea canephora; Biology; Coffea; Genome; Ploidy; Botany; Karyotype; Retrotransposon; Genetics; Chromosome; Gene","routes":{"ca_aff":false,"ca_fund":false,"ca_venue":true,"about_ca":false,"invisible_to_affiliation_only":true},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00003895785,0.0002408153,0.00009192102,0.0003384205,0.00015863,0.0001220095,0.0001064216,0.000214162,0.002731699],"category_scores_gemma":[0.00008379803,0.0001029718,0.0001438962,0.0001717424,0.0002413329,0.0001465693,0.0001264478,0.0002176066,0.0004156239],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0002057251,"about_ca_system_score_gemma":0.00008048106,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00241351,"about_ca_topic_score_gemma":0.002640982,"domain_scores_codex":[0.9999591,0.000001897109,0.000001993237,0.00002371173,0.000005842014,0.000007461432],"domain_scores_gemma":[0.9999446,0.00001523959,0.00001362607,0.000005470197,0.000006066846,0.00001501075],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.00002086391,0.000001728441,0.0007624144,0.00001298168,0.00000158624,0.00002518865,0.00003129835,0.00001063955,0.9982822,0.00002376665,0.000008136027,0.0008192757],"study_design_scores_gemma":[0.00002437315,0.0005153703,0.2996441,0.00003369505,0.0000617051,0.002025432,0.0003423763,0.001042944,0.6907489,0.0001998698,0.005341337,0.00001988362],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9956144,0.0002508707,0.002045014,0.00004151692,0.000005960147,0.000007078424,0.0003031037,0.00006425496,0.001667748],"genre_scores_gemma":[0.9922212,0.0002511996,0.003674307,0.0000476453,0.000004309431,0.00001197593,0.0009203621,0.00001433536,0.002854771],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.002731699,"threshold_uncertainty_score":0.009138465,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.03051120046985897,"score_gpt":0.2243423854319607,"score_spread":0.1938311849621017,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}