{"id":"W2028983737","doi":"10.1111/j.1755-0998.2009.02634.x","title":"Development of primers for the mitochondrial cytochrome <i> c</i> oxidase I gene in digenetic trematodes (Platyhelminthes) illustrates the challenge of barcoding parasitic helminths","year":2009,"lang":"en","type":"article","venue":"Molecular Ecology Resources","topic":"Parasite Biology and Host Interactions","field":"Environmental Science","cited_by":278,"is_retracted":false,"has_abstract":true,"ca_institutions":"Environment and Climate Change Canada; Concordia University; University of Guelph","funders":"Natural Sciences and Engineering Research Council of Canada; University of Toronto; Genome Canada","keywords":"Biology; Cestoda; DNA barcoding; Monogenea; Flatworm; Amplicon; Cytochrome c oxidase subunit I; Zoology; Trematoda; Mitochondrial DNA; Pseudogene; Ribosomal RNA; Phylogenetics; Taxonomy (biology); Subfamily; Gene; Helminths; Genetics; Polymerase chain reaction; Gill; Fishery; Genome; Fish <Actinopterygii>","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002658333,0.0001440597,0.0002354593,0.00004890541,0.0001971257,0.000007179686,0.0003711783,0.0001152787,0.0001294852],"category_scores_gemma":[0.00008755422,0.00009200918,0.00009548387,0.000121481,0.0004328687,0.00003320171,0.00004762626,0.0001226866,0.00001356051],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00004971228,"about_ca_system_score_gemma":0.00002410673,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00002170524,"about_ca_topic_score_gemma":0.0003745569,"domain_scores_codex":[0.9988549,0.0001199831,0.0003891154,0.0002474025,0.0001089504,0.0002796378],"domain_scores_gemma":[0.9990905,0.0004474029,0.0001765967,0.0002391501,0.00001097109,0.00003536464],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0001388783,0.0002220435,0.005985829,0.000008714735,0.00006933594,0.000008178692,0.003229416,0.001973434,0.9840309,0.0001178414,0.00001641745,0.004199004],"study_design_scores_gemma":[0.0006376634,0.000394543,0.356022,0.00003160793,0.00007473309,0.00002379261,0.0007735583,0.0003446006,0.6378436,0.0005833834,0.003070488,0.0002000272],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.997043,0.0004128478,0.0006989717,0.0007665908,0.00006299501,0.0005318049,0.000006355027,0.000007714597,0.0004697565],"genre_scores_gemma":[0.9966288,0.00002797092,0.003006275,0.0001661213,0.00001595217,0.00008941968,0.00000430566,0.000007298294,0.00005385117],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.3500362,"threshold_uncertainty_score":0.3752026,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.0140628040675634,"score_gpt":0.2840321483528532,"score_spread":0.2699693442852898,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}