{"id":"W2028983737","doi":"10.1111/j.1755-0998.2009.02634.x","title":"Development of primers for the mitochondrial cytochrome <i> c</i> oxidase I gene in digenetic trematodes (Platyhelminthes) illustrates the challenge of barcoding parasitic helminths","year":2009,"lang":"en","type":"article","venue":"Molecular Ecology Resources","topic":"Parasite Biology and Host Interactions","field":"Environmental Science","cited_by":278,"is_retracted":false,"has_abstract":true,"ca_institutions":"Environment and Climate Change Canada; Concordia University; University of Guelph","funders":"Natural Sciences and Engineering Research Council of Canada; University of Toronto; Genome Canada","keywords":"Biology; Cestoda; DNA barcoding; Monogenea; Flatworm; Amplicon; Cytochrome c oxidase subunit I; Zoology; Trematoda; Mitochondrial DNA; Pseudogene; Ribosomal RNA; Phylogenetics; Taxonomy (biology); Subfamily; Gene; Helminths; Genetics; Polymerase chain reaction; Gill; Fishery; Genome; Fish <Actinopterygii>","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0007131124,0.0009745771,0.0006852611,0.001005596,0.0005501421,0.0003949951,0.0006916848,0.001314681,0.002466494],"category_scores_gemma":[0.001630598,0.0006858056,0.000676048,0.0005358464,0.0005580542,0.0005627705,0.0004304108,0.001335313,0.001971099],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0003664028,"about_ca_system_score_gemma":0.0006024055,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0007157142,"about_ca_topic_score_gemma":0.002614696,"domain_scores_codex":[0.9989516,0.0001561302,0.00008904147,0.0005494584,0.0001566797,0.00009709297],"domain_scores_gemma":[0.9987158,0.0004064002,0.0003611661,0.000113815,0.0003017031,0.0001011045],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.00007984513,0.00005457764,0.004013853,0.0003428901,0.00002537181,0.0001791349,0.0001541568,0.0002079254,0.9699594,0.0004883723,0.0003717885,0.0241226],"study_design_scores_gemma":[0.0000873751,0.0009781563,0.03923162,0.000302318,0.0002465813,0.003607738,0.0002862347,0.00758124,0.9065305,0.001796841,0.03927609,0.00007529806],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.4895404,0.007353796,0.485122,0.0007807844,0.0007017878,0.0007364527,0.003923921,0.001698614,0.0101422],"genre_scores_gemma":[0.3359888,0.002332284,0.6436058,0.001175297,0.00007796726,0.0008860443,0.006259727,0.0002230228,0.009450968],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.002466494,"threshold_uncertainty_score":0.00825125,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.0140628040675634,"score_gpt":0.2840321483528532,"score_spread":0.2699693442852898,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}