{"id":"W2029068643","doi":"10.1016/j.virusres.2005.06.016","title":"Phylogenetic analysis of recent isolates of classical swine fever virus from Colombia","year":2005,"lang":"en","type":"article","venue":"Virus Research","topic":"Animal Disease Management and Epidemiology","field":"Agricultural and Biological Sciences","cited_by":30,"is_retracted":false,"has_abstract":false,"ca_institutions":"Canadian Food Inspection Agency","funders":"","keywords":"Outbreak; Biology; Classical swine fever; Virology; Virus; Phylogenetic tree; Strain (injury); Genotype; Genetics; Gene","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.0007194863,0.00009815493,0.0003832002,0.00009095098,0.00009281415,0.00001357913,0.0003764378,0.000106104,0.008160122],"category_scores_gemma":[0.0002387416,0.00004106699,0.000175374,0.001552079,0.0002505368,0.00004275974,0.0002374691,0.0001502222,0.0001120414],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00003057175,"about_ca_system_score_gemma":0.000009977232,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.004567748,"about_ca_topic_score_gemma":0.009901342,"domain_scores_codex":[0.998208,0.0003974668,0.0003623941,0.0003222298,0.0003415762,0.0003682769],"domain_scores_gemma":[0.9987847,0.000722393,0.00008847089,0.0001041307,0.0001797657,0.0001205446],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.0002439637,0.0003525988,0.04509627,0.000004458851,0.0003825672,0.000001552586,0.00003514449,0.00006774526,0.8679835,0.0002574866,0.005195927,0.08037878],"study_design_scores_gemma":[0.0001090013,0.0002850626,0.9230884,0.000004595163,0.0001385197,3.3442e-8,0.00007770273,0.002794403,0.009827603,0.0004165619,0.06316827,0.00008985244],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9954968,0.0006158429,0.000003859939,0.002001653,0.00001580582,0.0001447421,0.0001781445,0.00001295796,0.001530183],"genre_scores_gemma":[0.9980608,0.001142371,0.00008163646,0.0001304499,0.0001277903,0.00001124232,0.00009943702,9.540662e-7,0.0003452752],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.8779922,"threshold_uncertainty_score":0.9927465,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.1456366776733518,"score_gpt":0.3667989736014267,"score_spread":0.2211622959280749,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}