{"id":"W2029103722","doi":"10.7589/2012-05-147","title":"Phylogenetic Analysis of a Frog Virus 3–Like Ranavirus Found at a Site with Recurrent Mortality and Morbidity Events in Southeastern Ontario, Canada: Partial Major Capsid Protein Sequence Alone Is Not Sufficient for Fine-Scale Differentiation","year":2013,"lang":"en","type":"article","venue":"Journal of Wildlife Diseases","topic":"Viral Infections and Vectors","field":"Medicine","cited_by":24,"is_retracted":false,"has_abstract":true,"ca_institutions":"","funders":"","keywords":"Ranavirus; Biology; Lithobates; Capsid; Phylogenetic tree; Sequence (biology); Iridovirus; Phylogenetics; Virology; Zoology; Virus; Ecology; Amphibian; Gene; Genetics","routes":{"ca_aff":false,"ca_fund":false,"ca_venue":false,"about_ca":true,"invisible_to_affiliation_only":true},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000114041,0.000174326,0.0005929161,0.0002151246,0.00007143425,0.00001457311,0.00005740812,0.00004191288,0.0001463324],"category_scores_gemma":[0.00004329894,0.0001266514,0.000204614,0.0002680843,0.00005844478,0.00009585616,0.00002698143,0.0001164085,5.57803e-7],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0003599078,"about_ca_system_score_gemma":0.0005192576,"about_ca_topic_candidate":true,"about_ca_topic_consensus":true,"about_ca_topic_score_codex":0.7079598,"about_ca_topic_score_gemma":0.9463787,"domain_scores_codex":[0.9984494,0.00006619447,0.0005991773,0.0002119022,0.000463408,0.0002099454],"domain_scores_gemma":[0.9987525,0.00003281936,0.0005090401,0.000183035,0.0002599809,0.0002625779],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.001069459,0.0006075904,0.9906968,0.00009314744,0.0007180623,0.00001151879,0.0003769345,0.0003179374,0.00587558,4.077945e-7,0.0001195026,0.0001130731],"study_design_scores_gemma":[0.002253543,0.0006023989,0.9893988,0.0001787261,0.002698949,0.000009499029,0.00006515232,0.003667633,0.0009572509,0.000006411432,0.00003558411,0.000125989],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9981683,0.0001680743,0.0001550539,0.0001901625,0.00009525962,0.0007345373,0.0004842584,0.000003247977,0.000001077954],"genre_scores_gemma":[0.9995527,0.000009429059,0.00005743903,0.0001440315,0.00005821891,0.00005785665,0.00005519172,0.00001088663,0.00005427334],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.238419,"threshold_uncertainty_score":0.5164693,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.03484811680431851,"score_gpt":0.2823959218904108,"score_spread":0.2475478050860923,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}