{"id":"W2029185214","doi":"10.1139/w05-023","title":"Phylogenetic analysis of mutualistic filamentous bacteria associated with fungus-growing ants","year":2005,"lang":"en","type":"article","venue":"Canadian Journal of Microbiology","topic":"Insect and Arachnid Ecology and Behavior","field":"Biochemistry, Genetics and Molecular Biology","cited_by":146,"is_retracted":false,"has_abstract":true,"ca_institutions":"","funders":"Division of Environmental Biology","keywords":"Biology; Symbiosis; Actinobacteria; Fungus; Botany; Phylogenetic tree; Phylogenetics; Monophyly; Bacteria; 16S ribosomal RNA; Clade; Genetics; Gene","routes":{"ca_aff":false,"ca_fund":false,"ca_venue":true,"about_ca":false,"invisible_to_affiliation_only":true},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002035389,0.0001231729,0.0003343181,0.0002890766,0.00007580192,0.000007639398,0.0001899566,0.0002108096,0.0003141344],"category_scores_gemma":[0.00006196499,0.0001038486,0.000147418,0.0001960437,0.0001776079,0.000005009086,0.00001205283,0.00011208,0.00000255291],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00004465688,"about_ca_system_score_gemma":0.0004143956,"about_ca_topic_candidate":true,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0001369584,"about_ca_topic_score_gemma":0.02918538,"domain_scores_codex":[0.999111,0.00009538962,0.0003326676,0.0001383642,0.000024446,0.0002981201],"domain_scores_gemma":[0.999236,0.00001839532,0.0002920182,0.0001286506,0.0001712199,0.0001537153],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.00005114576,0.00003963092,0.04705203,0.000002333333,0.0008435835,0.00003741186,0.00008112221,0.0002480485,0.9507714,0.000005017342,0.0004191728,0.0004491314],"study_design_scores_gemma":[0.001861527,0.002274903,0.3578593,0.00005417864,0.002745412,0.0005988328,0.000200146,0.00002572068,0.6242884,0.000005869991,0.009590162,0.0004955842],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9989619,0.0005531429,0.00004134732,0.00006179611,0.0001401759,0.00004687835,0.000145708,0.000001181912,0.00004788828],"genre_scores_gemma":[0.9989412,0.00001720209,0.0001861813,0.0003328448,0.0001047401,0.000001044466,0.0002220389,0.00000989749,0.000184809],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.326483,"threshold_uncertainty_score":0.9885294,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.007756852819886961,"score_gpt":0.2138539210099863,"score_spread":0.2060970681900993,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}