{"id":"W2029329678","doi":"10.1093/nar/gkr1043","title":"Database for bacterial group II introns","year":2011,"lang":"en","type":"article","venue":"Nucleic Acids Research","topic":"RNA and protein synthesis mechanisms","field":"Biochemistry, Genetics and Molecular Biology","cited_by":122,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Calgary","funders":"Canadian Institutes of Health Research","keywords":"Intron; Group II intron; GenBank; Biology; Group I catalytic intron; Exon; Database; Genetics; genomic DNA; Computational biology; Sequence (biology); RNA; Gene; RNA splicing; Computer science","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.001101743,0.0001164305,0.0001165763,0.00007174285,0.0003384009,0.0000275147,0.0004552316,0.0001717418,0.0008261046],"category_scores_gemma":[0.0003414488,0.0001057535,0.00007936432,0.00008852653,0.0001366588,0.000007245784,0.0004321391,0.0001265824,0.00006969389],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00001419847,"about_ca_system_score_gemma":0.00006965152,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00003857862,"about_ca_topic_score_gemma":0.00002174017,"domain_scores_codex":[0.9985696,0.0001574606,0.0001521403,0.00039876,0.0002311382,0.0004909151],"domain_scores_gemma":[0.99909,0.00002883584,0.00002835007,0.0005758499,0.000140093,0.0001368846],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0005524057,0.0001029391,0.00005925881,0.00001763015,0.00002760138,0.000002158736,0.00009084446,2.574408e-8,0.977851,0.002885057,0.00815285,0.01025822],"study_design_scores_gemma":[0.0005007003,0.001145246,0.0001749111,0.00001039889,0.00000578633,0.000004522397,0.00008601231,0.000009499715,0.7482724,0.00113269,0.2485232,0.0001346436],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9821262,0.0001838996,0.008741975,0.0001768962,0.0003210313,0.0008080648,0.0001530295,0.00002403064,0.007464894],"genre_scores_gemma":[0.978439,0.0001023163,0.01792532,0.00006778848,0.0008063462,0.0002745963,0.0002398744,0.00004717457,0.002097531],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.2403704,"threshold_uncertainty_score":0.9045267,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.0770716337244842,"score_gpt":0.3301361965739163,"score_spread":0.2530645628494321,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}