{"id":"W2029431924","doi":"10.1016/j.virol.2004.12.003","title":"Modular arrangement of viral cis-acting RNA domains in a tombusvirus satellite RNA","year":2005,"lang":"en","type":"article","venue":"Virology","topic":"Plant Virus Research Studies","field":"Agricultural and Biological Sciences","cited_by":9,"is_retracted":false,"has_abstract":false,"ca_institutions":"York University","funders":"Natural Sciences and Engineering Research Council of Canada","keywords":"RNA; Biology; Replicon; RNA silencing; RNA-induced transcriptional silencing; RNA editing; RNA-dependent RNA polymerase; Genetics; Intron; RNA-induced silencing complex; Non-coding RNA; Helper virus; Small nuclear RNA; Genome; RNA interference; Virology; Computational biology; Gene","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0003469585,0.0001186884,0.000262712,0.00003558719,0.00007976209,0.00001035474,0.0002305337,0.00008465201,0.0001929675],"category_scores_gemma":[0.00007096188,0.00004933858,0.00006258229,0.0002119797,0.0001132218,0.00008603085,0.0001415402,0.0001569823,0.00006556365],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00004047491,"about_ca_system_score_gemma":0.000004646006,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0004234569,"about_ca_topic_score_gemma":0.003328134,"domain_scores_codex":[0.9987374,0.0001322252,0.0002621304,0.0002462913,0.0001927257,0.0004292484],"domain_scores_gemma":[0.9995705,0.0002131435,0.00008026041,0.0000568841,0.00002358304,0.00005563865],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.00009383109,0.00007555795,0.0007289129,0.000003604046,0.00001654415,0.00001888608,0.0001326305,0.0000388819,0.8520765,0.0001145174,0.00006315207,0.1466369],"study_design_scores_gemma":[0.0009920428,0.001166152,0.59715,0.00003249295,0.00001660736,0.00001383807,0.0004457691,0.0007447012,0.1978521,0.001216843,0.1999307,0.0004388266],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9942404,0.0008797542,0.000004883069,0.001790953,0.00004367394,0.0001645174,0.00005611463,0.00002449676,0.002795223],"genre_scores_gemma":[0.9984766,0.0007863267,0.0001437775,0.0003073222,0.0001557106,0.00001880219,0.0000134418,8.183752e-7,0.00009719562],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.6542245,"threshold_uncertainty_score":0.2112859,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.03251063739218122,"score_gpt":0.2661198208297885,"score_spread":0.2336091834376073,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}