{"id":"W2029525597","doi":"10.1371/journal.pone.0058173","title":"T3_MM: A Markov Model Effectively Classifies Bacterial Type III Secretion Signals","year":2013,"lang":"en","type":"article","venue":"PLoS ONE","topic":"Vibrio bacteria research studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":46,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Saskatchewan","funders":"","keywords":"Effector; Secretion; Amino acid; Biology; Biochemistry","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00154956,0.0009237565,0.0008859079,0.0006795524,0.0005689448,0.0008136879,0.001008383,0.001031589,0.001363662],"category_scores_gemma":[0.002554686,0.0003358388,0.001285618,0.0003107906,0.0006081231,0.0006235217,0.0007251488,0.001208835,0.0003403826],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.001167262,"about_ca_system_score_gemma":0.0015187,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.01457555,"about_ca_topic_score_gemma":0.008150002,"domain_scores_codex":[0.9995937,0.0001361641,0.00002575594,0.0001220409,0.00005146095,0.00007094874],"domain_scores_gemma":[0.9981675,0.001334795,0.0001837927,0.00005321264,0.0001688429,0.00009176696],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"simulation_or_modeling","study_design_gemma":"simulation_or_modeling","study_design_scores_codex":[0.000447084,0.00008697184,0.007810893,0.00005599997,0.00008213254,0.00007824379,0.00004519571,0.9636322,0.00269232,0.005620677,0.0006612214,0.01878708],"study_design_scores_gemma":[0.000005321006,0.0000191454,0.0001396628,0.000002453045,0.000005778288,0.000005967615,0.000001917262,0.9986565,0.0001936817,0.000917021,0.00004881235,0.000003764711],"study_design_candidate":"simulation_or_modeling","study_design_consensus":"simulation_or_modeling","genre_codex":"methods","genre_gemma":"empirical","genre_scores_codex":[0.3601134,0.0006326314,0.6338556,0.0007381007,0.0001120779,0.000152821,0.0008815247,0.001219219,0.002294491],"genre_scores_gemma":[0.9416924,0.0002220932,0.05437467,0.0002312132,0.00005460575,0.0002377478,0.001287775,0.00006525189,0.001834313],"genre_candidate":"empirical","genre_consensus":null,"teacher_disagreement_score":0.01457555,"threshold_uncertainty_score":0.02898139,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.03512002544380456,"score_gpt":0.2523949777602476,"score_spread":0.2172749523164431,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}