{"id":"W2029536289","doi":"10.1111/j.1574-6968.2007.00734.x","title":"The O<sub>2</sub>-responsive repressor PpsR2 but not PpsR1 transduces a light signal sensed by the BphP1 phytochrome in<i>Rhodopseudomonas palustris</i>CGA009","year":2007,"lang":"en","type":"article","venue":"FEMS Microbiology Letters","topic":"Light effects on plants","field":"Agricultural and Biological Sciences","cited_by":20,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of British Columbia","funders":"Boehringer Ingelheim Fonds; U.S. Department of Energy","keywords":"Repressor; Complementation; Rhodopseudomonas palustris; Phytochrome; Lac repressor; Transcription (linguistics); Psychological repression; Biology; Gene; Photosynthesis; Biophysics; Chemistry; Biochemistry; Transcription factor; Gene expression; Genetics; Mutant; Botany; Bacteria; Red light","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.001827059,0.0004677815,0.0004708687,0.00004116961,0.000677701,0.000117532,0.0009692381,0.0003735952,0.0000426602],"category_scores_gemma":[0.0001315399,0.000154441,0.000243817,0.0005057608,0.0005988299,0.0001214413,0.0001201433,0.0006800437,0.0001551309],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00008629417,"about_ca_system_score_gemma":0.00002023477,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0002163329,"about_ca_topic_score_gemma":0.0009046269,"domain_scores_codex":[0.9962322,0.0009069839,0.0006287505,0.0008294132,0.0001939428,0.001208759],"domain_scores_gemma":[0.9951354,0.004119135,0.0002916081,0.0002529401,0.0000673688,0.0001335632],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.000625975,0.00006378127,0.0004656658,0.000004023613,0.00006963767,0.0001247901,0.0002385505,0.000004158976,0.9616837,0.000005182598,0.02986112,0.006853404],"study_design_scores_gemma":[0.0005731389,0.0002067771,0.01857865,0.00003419839,0.00002698871,0.0002433654,0.0002407138,0.000004665203,0.9537991,0.00001622767,0.02588134,0.000394787],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9652948,0.0005683141,0.00001106975,0.03223887,0.0004852751,0.0009086739,0.000324489,0.00009807381,0.00007040401],"genre_scores_gemma":[0.9880093,0.00007705644,0.00001401511,0.01110807,0.0004247591,0.00005692461,0.0001588513,0.000006312954,0.0001447201],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.02271446,"threshold_uncertainty_score":0.629792,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.007353557825973703,"score_gpt":0.1923382402237032,"score_spread":0.1849846823977295,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}