{"id":"W2029789663","doi":"10.1038/nprot.2009.69","title":"Multichannel wholemount fluorescent and fluorescent/chromogenic in situ hybridization in Xenopus embryos","year":2009,"lang":"en","type":"article","venue":"Nature Protocols","topic":"Congenital heart defects research","field":"Biochemistry, Genetics and Molecular Biology","cited_by":46,"is_retracted":false,"has_abstract":false,"ca_institutions":"University of Calgary","funders":"Alberta Heritage Foundation for Medical Research","keywords":"Chromogenic; In situ hybridization; Chromogenic in situ hybridization; Biology; Xenopus; Gene expression; Fluorescence in situ hybridization; In situ; Computational biology; Immunofluorescence; Gene; Molecular biology; Genetics; Chromosome; Chemistry","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0003071402,0.0001982725,0.0001956144,0.0001753774,0.00004856706,0.00005610928,0.0001861901,0.0003963408,0.000006534263],"category_scores_gemma":[0.0002411033,0.0001934711,0.00004930046,0.0002898621,0.0000472743,0.00001144281,0.0001192696,0.0005396081,0.000009518528],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00007763344,"about_ca_system_score_gemma":0.0001036833,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00001595737,"about_ca_topic_score_gemma":0.0003819391,"domain_scores_codex":[0.998403,0.000126667,0.0002687981,0.0005125299,0.0002621281,0.0004269044],"domain_scores_gemma":[0.9994022,0.00001393879,0.00004280094,0.0003292588,0.00009803138,0.0001137181],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0003680513,0.0002567091,0.006317448,0.00008261517,0.00000718754,0.00005538807,0.00006679037,0.00002044396,0.9772564,0.00003389111,0.0002400583,0.01529508],"study_design_scores_gemma":[0.003179622,0.000719458,0.07869088,0.0002037487,0.000004164428,0.00004175893,0.0000238404,0.0006102908,0.9099025,0.0001497657,0.006128721,0.0003453146],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9610182,0.0009795434,0.00002955334,0.0002764348,0.00003429233,0.03739727,0.00001041073,0.00001611021,0.0002381855],"genre_scores_gemma":[0.9912021,0.00003286971,0.0003439592,0.0002412911,0.0001162911,0.007871641,0.00006247666,0.00002091556,0.0001084874],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.07237343,"threshold_uncertainty_score":0.7889522,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.009016398500443307,"score_gpt":0.3209085497961028,"score_spread":0.3118921512956595,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}