{"id":"W2029987169","doi":"10.1083/jcb.152.1.165","title":"The Phagosome Proteome","year":2001,"lang":"en","type":"article","venue":"The Journal of Cell Biology","topic":"Galectins and Cancer Biology","field":"Immunology and Microbiology","cited_by":691,"is_retracted":false,"has_abstract":true,"ca_institutions":"Université de Montréal","funders":"Medical Research Council; Natural Sciences and Engineering Research Council of Canada","keywords":"Phagosome; Biology; Cell biology; Proteome; Phagolysosome; Rab; Endocytic cycle; Innate immune system; Biogenesis; Golgi apparatus; Phagocytosis; Biochemistry; GTPase; Endocytosis; Endoplasmic reticulum; Receptor","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001938345,0.0006852559,0.0006082542,0.0008078233,0.0007318653,0.0008733157,0.0003233258,0.0006074695,0.002777397],"category_scores_gemma":[0.0002302947,0.0002098061,0.0005688773,0.0007633956,0.000185442,0.0005798949,0.0007663837,0.0006040084,0.003708638],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0003992784,"about_ca_system_score_gemma":0.0006398622,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0007548591,"about_ca_topic_score_gemma":0.0007653135,"domain_scores_codex":[0.9998239,0.00001320284,0.00001499762,0.00006086149,0.0000534611,0.00003361841],"domain_scores_gemma":[0.999909,0.000008472026,0.00001423766,0.00001254834,0.00002785633,0.00002782518],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0002936646,0.00002873614,0.001085136,0.0004091049,0.00003264082,0.0003245329,0.00006494963,0.0000698513,0.9827466,0.0005718296,0.002247659,0.01212515],"study_design_scores_gemma":[0.0000826077,0.0003402981,0.08212049,0.0002329878,0.0002125505,0.005642953,0.0002756948,0.00293208,0.5975099,0.002829891,0.3077405,0.00008002543],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.7454461,0.06494085,0.04443402,0.002341908,0.001251201,0.000630986,0.1102137,0.002327937,0.02841335],"genre_scores_gemma":[0.6028225,0.02972166,0.07460734,0.001431148,0.000370523,0.0004421634,0.2484349,0.0007194718,0.04145029],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.002777397,"threshold_uncertainty_score":0.009291291,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.009338028423926345,"score_gpt":0.234799133874909,"score_spread":0.2254611054509827,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}