{"id":"W2029987169","doi":"10.1083/jcb.152.1.165","title":"The Phagosome Proteome","year":2001,"lang":"en","type":"article","venue":"The Journal of Cell Biology","topic":"Galectins and Cancer Biology","field":"Immunology and Microbiology","cited_by":691,"is_retracted":false,"has_abstract":true,"ca_institutions":"Université de Montréal","funders":"Medical Research Council; Natural Sciences and Engineering Research Council of Canada","keywords":"Phagosome; Biology; Cell biology; Proteome; Phagolysosome; Rab; Endocytic cycle; Innate immune system; Biogenesis; Golgi apparatus; Phagocytosis; Biochemistry; GTPase; Endocytosis; Endoplasmic reticulum; Receptor","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.001018647,0.0001178606,0.0002260197,0.00004644644,0.0003522337,0.000007198066,0.0006251206,0.0001788533,0.0003510836],"category_scores_gemma":[0.00006865487,0.00004928194,0.0001101837,0.0001149937,0.0005149943,0.00002842054,0.0000690089,0.0005026011,0.0002016913],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00002686096,"about_ca_system_score_gemma":0.00008719569,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00002574544,"about_ca_topic_score_gemma":0.00002534057,"domain_scores_codex":[0.9985498,0.0006102758,0.0003826335,0.00008240206,0.00002019471,0.0003547271],"domain_scores_gemma":[0.9987833,0.000429814,0.0004003393,0.000230036,0.0001382369,0.00001820885],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"not_applicable","study_design_scores_codex":[0.0005546943,0.00003858345,0.0006925227,0.000001553356,0.00009762001,0.000003728971,0.0001469404,0.000002911017,0.9859681,0.0003963312,0.002004958,0.0100921],"study_design_scores_gemma":[0.0009991615,0.001149473,0.001822159,0.00000485396,0.00005175083,0.00149075,0.0002678452,6.260975e-7,0.2269593,0.002509442,0.7646558,0.00008877505],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9705396,0.01873578,0.000169589,0.002484355,0.001906905,0.0001469207,0.000002845586,0.00001089519,0.006003071],"genre_scores_gemma":[0.9910065,0.004480641,0.00001468634,0.000373661,0.0001964206,0.000004185494,0.000002156587,0.000007721949,0.003914033],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.7626508,"threshold_uncertainty_score":0.3844118,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.009338028423926345,"score_gpt":0.234799133874909,"score_spread":0.2254611054509827,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}