{"id":"W2030677513","doi":"10.1139/g05-119","title":"Quantification of the retrotransposon BARE-1 reveals the dynamic nature of the barley genome","year":2006,"lang":"en","type":"article","venue":"Genome","topic":"Chromosomal and Genetic Variations","field":"Agricultural and Biological Sciences","cited_by":28,"is_retracted":false,"has_abstract":true,"ca_institutions":"Agriculture and Agri-Food Canada","funders":"Canadian Food Inspection Agency","keywords":"Hordeum vulgare; Retrotransposon; Biology; Genome; Hordeum; GenBank; Genetics; Long terminal repeat; Triticeae; Genome size; Gene; Botany; Transposable element; Poaceae","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":true,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001796372,0.00007972176,0.0001012882,0.000004195071,0.0002456326,0.00001371641,0.0005714593,0.00009746687,0.0001507873],"category_scores_gemma":[0.00002478855,0.0000191622,0.0001426842,0.0004191903,0.0001040627,0.00002099092,0.00005237479,0.0001393274,0.000005860678],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00001812479,"about_ca_system_score_gemma":0.00001115613,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0001722533,"about_ca_topic_score_gemma":0.0009515915,"domain_scores_codex":[0.9991858,0.00009981303,0.0002344016,0.0001473428,0.0002044399,0.0001281856],"domain_scores_gemma":[0.9995242,0.00008058565,0.0001214698,0.0001853575,0.00007424792,0.00001414052],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.000003427326,0.00002549184,0.004333789,0.000005392615,0.000005977853,3.891582e-8,0.00007804318,0.0001522605,0.9934253,0.001809725,0.00001058337,0.0001499709],"study_design_scores_gemma":[0.00003385789,0.00002472031,0.9872566,0.00001057701,0.00001860359,0.000001779063,0.00005710706,0.00001879557,0.005785859,0.002574769,0.004165717,0.00005162419],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9919451,0.0007804825,0.000004460341,0.005925697,0.0001334727,0.000311516,0.0002467443,0.000008447319,0.0006440384],"genre_scores_gemma":[0.9991004,0.00002627052,0.00001849861,0.0001020578,0.0000998866,0.000009301541,0.00003184706,8.378602e-7,0.0006108513],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.9876394,"threshold_uncertainty_score":0.1889232,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.008618383983007459,"score_gpt":0.1995040030995186,"score_spread":0.1908856191165111,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}