{"id":"W2030727531","doi":"10.1016/j.vetimm.2010.03.026","title":"Gene expression profiling of PBMCs from Holstein and Jersey cows sub-clinically infected with Mycobacterium avium ssp. paratuberculosis","year":2010,"lang":"en","type":"article","venue":"Veterinary Immunology and Immunopathology","topic":"Mycobacterium research and diagnosis","field":"Medicine","cited_by":27,"is_retracted":false,"has_abstract":false,"ca_institutions":"University of Guelph","funders":"Natural Sciences and Engineering Research Council of Canada","keywords":"Paratuberculosis; Mycobacterium avium subspecies paratuberculosis; Biology; Peripheral blood mononuclear cell; Immune system; Immunology; Gene expression profiling; Gene; Mastitis; Mycobacterium; Gene expression; Mycobacterium bovis; Microarray; Microbiology; Genetics; Tuberculosis; Medicine; Pathology; Bacteria","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001360806,0.0001261209,0.0003093634,0.0003095796,0.000351631,0.0005011515,0.0001101581,0.0003767551,0.001830421],"category_scores_gemma":[0.0002130368,0.0000970756,0.0001863425,0.0003772344,0.0002145096,0.0001340658,0.0001633028,0.0004430355,0.000441938],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001321271,"about_ca_system_score_gemma":0.0002250116,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001046235,"about_ca_topic_score_gemma":0.002235196,"domain_scores_codex":[0.999763,0.00002838356,0.00001412189,0.00006368408,0.00004791976,0.00008299365],"domain_scores_gemma":[0.9999011,0.00003835145,0.00001053542,0.000006282605,0.00002363537,0.00002016851],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.001818302,0.0001141766,0.01179514,0.00008502541,0.00002739355,0.0002381715,0.0003342618,0.00006676802,0.9814631,0.00005170526,0.0002693709,0.003736684],"study_design_scores_gemma":[0.0001619758,0.002513672,0.7788672,0.00004743814,0.0002362383,0.001790631,0.003821646,0.001445071,0.2038641,0.0003530375,0.006866667,0.00003234698],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9939236,0.001021107,0.0004600504,0.0001741209,0.00007048564,0.00002999379,0.002500884,0.000009438747,0.001810311],"genre_scores_gemma":[0.988071,0.000957761,0.001172329,0.0004166806,0.00008646079,0.0001229422,0.004921162,0.000009108687,0.004242565],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.001830421,"threshold_uncertainty_score":0.006123424,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.0169946756222283,"score_gpt":0.2798090896605872,"score_spread":0.2628144140383589,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}